RNA id: TU610273


Basic Information

Item Value
RNA id TU610273
length 7752
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G538891
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69044070 ~ 69144935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcttctctcactccagTTAATGGGCACGTTCCTCAGCGTGTCTACTGTGAACATGtctactgtgatgtccaaacttgtgaaaaaCAGATGtatatgattggttcagatttggtctggtccggACCAACCAAATGTGGTCATGTTTTGGGGGCAGAGCTCATTACGATAATAGCCAGTGTAGATTAATACCCAAATATTTCTACATATTTGAAatatttctacctttgtgtaccAATTCAGGCTACTTCACCATGAAGGTAAtgatattcatatccataatGATGAATTTCTGTATAGTACAGCTCAGGGACCAATGATATAACATTTTGGTTACAAGGTGTCATGTCTTAGCTGACAACCCATTATTTCTGCAGACTTCATCTTAATTCGTAGCAGATGGATATATTTACGTTTTTTGGAAAATTGTATTTTTCTATAATTCTTTTACCATACTTTGGCATCTGCACAGTTATtccagaaaatgtgtttttgtgaacatttctgtgtaaattgttcaaagtagttATTGTGTATGGTTAGTTAAGCTTTTAATATATGTTTTTTCTTTGGCATACATTtaaaagtgaaaaatctgagtcaaAGCGTAATTCTGTTTATTGTGTAATTGCCTTGGGAAAGATTGACATCAATTTCCTAAAGGCATGGCTAAGGCCTATACACGGCATGTAGCAAGACTGGAGGCCTATCTGTGCACAACAGGCATCCGGAGTGTTTATCTGTTAGATTTCCCATCTGTATAGTTCTTGTTTTCGCTCTAGacttctctgttctgttgtcagaagtctctctgctctgtctccttCCCAGTGCTTTTACATTTGTTTTCATCTTGTGGTTGTGCGAAACGACATACTTTTCATGCAAAGTAAACACATCCGGATGCTCATCTCTTAGCAGTTGATCTCTGGCATAGAGATGGACAATGAGGACTTGGGGATTGTAAGTGCGCATTGCAGCGGTTCCAAATGTCCATGGGCATATTGTAGTGCAGTGCCAGAACTCCCTGCACCTGCTGTAAATCACCAGGCCTGGTGCCACTGAGGACAGTTGAATGCTTGCCGCTGCAGAAAAACACTATgtaagcagccacacacacactatgttcaCTGAAGTTGGTTTTGATAAATAGCTTTGCCATGTCTCAAATCGGACAGAGGGGAATCTTGAAATATAATCCAGTGTTCATGGGAACTGTGTGTGTTTCCAACTCTTCAAGTCTCTCTACTAGCTGCTGGACCTGGGCCACTCCACCAGCCATAAATCAGCTGTGACCCTTTTTTGTTTTACTCTTGATGCTTTCTCTAGCCCCCTAAAATCTAGCTATAGCTAATGTGGAACAGAACCTCAGGCTCGAATAGGAGATGCTGGACTCACACAGCCCATAATTGGTCCCTGGGGAGCCCAGGTTATTGACTGGGAGTCAACAGGGGTTTGAAGTGATTTGCTGGAGAATGAGGAAGTTATTGGGTGAGGGTGACAGGGAGAAAATGGCATGCTGATGGTCTTTGAGGCACCACTAGGCAGAATTCAGCTCGACTCCACAAATGTGCTTTCTCCTGTGCACAGCACCAGTTCAGGTCCTAAACATAACCGAACTCACCCCTATCATGCTCCCTCACCCCTCTTCATACAACCTCTCTCAAACACAAACTCCTCTTcaacccctactcccccattcctcTCACAGCCTGAACACAAGGACTCTCTCATGATATGGTTTCTTGGAGAAACTGTAAGCGCCCAGTGTGGTGAGGTGATTTTGTTGGCTTACGAGTTACCACTCCCTTGGTTGGAGAGACTATTGCAAACACTTTGGCTATAGATCTGCTGTGGTAAATATTGCATTATGACTTTGCAGTGTTTTGTAACATGGCATACTTGTGCAATCGCTGTGTCAATCTTTAACAGGCCTGTGACTGTGCTGTGGACTCGGCTGTGGCCTACTTTAGCCAATGAGAGCTGACGGGTCTAAGGGAGCGTGCCGCTTCTATACAGCCAGAGCAGGATGCCTCTTAGACTCCGTAGCTTTGAAGTGCCGTAATGATATCACCGCGACCGTGCCTCTTAGACCTAACCATGGGAGTTGGCCCTTTTGAGATGGATGGTCTCGTAGTGTCGAAATGCGACTTTCTCCTCCCACCTCTTTGGTGGTTAACAGATGACCTCTGCATTGTCTGTGGCCTTTGTTGCTCCCTATAGATGAGCGCTGCGCCCCCTGACATCCATGACACTGTAAAGATATGAATCAGTGTCTCTGGCATCTTGCGAATGGTGTGATCAACTCTGTTTTGCTCCAGAGTTGGAGTTGAGGCATGAGACATTTTGATGGTTTTGGAACACGTATAACTTTTCGTAACCTTTTTGGTAATGAGCCTGAAGGCAGAGCATTATTTAAGAGGTAAATGACCTTTCATCATCTGCAGAACTACCCTCAACTTGGCCCGTGAGAACAGTCAGTAGTTGGGGTGGAAACGTTTTGCATTGCAAAAGCAGCTTTTGTTTGGCGCTGCTTATAGAGACATGACCTGAGTATGAGGTAAACCTCTGGACAGAGCCGTGCTGGGATGGCCGCACCCCGACTcccaaacaaaaacattttctcCTGAAAGCCAGGCTGTCAGCAGGCGGCCGTCTGGAGCCTACATCAGGAGTGGACACCCAGATCACCAGGGACCAGAGAGGGGCCATGGGAGCCAGGGACCAGAGAGGGGCCATGGGAGCCAGGGACCAGAGAGGGGCCATGGGAAGTCTCTATTAATCCCCTGCTCTCCCGCAGGACAGGGATGGGTCAGGGCAGAAGGACTGAGGTGAACCACTCACAGGTCACAAGGGCTGTAACCAGAGCCAGATGTACTGAGGGGACACAAATGTACACTGACAATAGGCCTACATCCATTTagggatttattttatttttcttaactTTATTTTCATGTAGATAAAGTTGTCCTAATAGCGGGAGTGTTTGCTAATGATTTAAGCAATTGTTTTTCTAACTTAGTCTGTCTATTCAACTTTCTACATCTCCTCTCCTAGATGCGTGGGTGTGTAGAATGCAATAGGCTATGGCACTTTGGTCAAAAAATATTTTATGTGGACATTTATTTTATAAATGCAAGCTTTCATTGCTTACCAGTAAAGAAATAAATCAGtcttaaaaaaattaaaataaaaaaaaattcaacaGCAGTCAACAAGGTTGTTCTGGCTCTGTGGCCTATAATGCACTTATGTTATGTCAGGGATAATGCTCCAGTCCTCTCCAACTTGGCATGGTATAATTTGATACTGAATTGTTTCTAAATTTATAGACTAATCGATGCTGATCAGGCCCGGTCCTGGCCGATATGTCGCCCTAGGCGAGATGAAGAAAAATTGCAGCCCTACTAGCCGTGCCAAGTAGAATAGTAGCCTAGGCTATACAGTGCCGGCCTGCAATACATTTTTGCGATTGCCCATGTGGTAGCCTAGCTTTTGAAAATCAGGCAATTTAATGTTAATCCCTGTCATTTGGTTACAtgaatttctgttaatgcatgtgTTATTTACAGTTCTCACGCTTGCTGTGTGCAAAATGTAGGAAAGTGCCCAATTGACAATGTCTGATTTCTTTCATAACTCACCTCCACCATTAATAAGCTGAGCTTCCCAGtcattttttcttcacctcacaGAATGTTAATGTCTGTTTTTTCACATCTATTGCAAAAGATAGTTCCTtagtatttgaaaaatctttccaacactcctGGGCCTCTAATCACCAAGCCTCCTTGTGAAAGCTAAATATCATGATCTGATGATTCCATatatccagtggaaacgtcataaaaaaaaacagccatctgtcccgagctcactggTGCAGGAAACTCTGAAGGCCAAGAATAAGCTAGTTGTATACAATGTTTAAAGTTTGCTAGCACCAGCTTCCGGCTGGACCCAGTTGAtgattttatacaatgttgcacttCACTAGCAATAGCTCAAGTCAAAGTGAGGCAGGGAGGTGAAATAGAGAGATGGACCAGAATTTTCAACATGatattttctgtttttatttgtctgCTTTAGGTTGACGATGGCAGTTATAGGTCTACTGCTGCACTGGCCTATATGTTATCTCTGAGTTCCATGTGTTCATTTCTTTAGCCGCCAATGGACCACAGTCTATCAATGGGTCCAAATGGCAGAGGCTGGTGCTCCCACCTTAGTTGAATTTGAACTTTTagatttttatgattaaccacGTGACAATGATTTTTGAGAAATACAAACGttattgaaatgaaactgttTCACAATAATGCACACAATAAATAGTCATAACTGTCACGCAGATCGGTAaaaatggtaggataaattgtaaGCTTTTCCAAACTTCCCCTGAAAAGAACCTGCGTCCATCAAAGCCACCAGCATATGTCAGACACAAGCAAATATTTATAATTTCCTTAAAACGAGTGAAGAAACCTAGGCCTACCTTAGGCTTTCTGGATAGGCTATAAGGGAATACATTGACAAGGAAAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGATGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGCAACATCTATGCTGTAGTATGAAGGTGAAATGTATGACAATTAAAATGGAAACAAATACACGCAACATGTCCAGAGCCTATTTATCAACGATGCTGATTATTGAGGGGAAGTATGTtggaaacattttttaaaatactGTTAGGAAATATAATAAtctggatgtaaaaaaaaaaatggggggtGACTTTGTGGACTTACTTTGTGAAGTGAAGACAAAATGGCTGAGAAGGCCAGCTTATTAGTGGTGGTGAGTTTAGACAATCAGACATCCCTAAATGGGCACTTTTTTACATTTTGACATTTGCGAGAAGCACTTGCATGCGCAGGCGCACGTGCTCTGTCAACATTAACgagacagagaaaccagacacatgctcaCATGGAGCGCATAAATGATGGTATGAAATAAACCTAAACTGCTGGATAAGTTGACTGATaaaacattctcatttacagcaatgaccttgggaatagttacagaggagaggggatgaatgagccaattggaagctggggatggtatgagggccagattgggaatttagccaggacaccggggttaacacccctactcttatgtgCCATGGGCTCTTTATTGACCAGTCAGGccacccatttaacgtcccattcgaaagatggcatcctacacagggcaatgtttccaatcactgccctggggcattggggtAATTATTTTAGGCCCGAGGAAAGAGTGCCCCCTACTGGGCCTCCAGCATCTGCTcttctgaccaggacccaccctgcttagcttcagaggcaagccagcagtgggatgctgctgaacagtttcccgtgtgtatcaagaatggtcctccaCCCAAAGGGCATCAAGCCAACTTCAcgtaactgtgggaagcattggagtcaacatgggccagcatccctgtggaacgctttcgacacctggTAATGTCCATTCCCCGACAAACTGAGGCTGTTACGAGGGCAAAAGTGGAGGGGTgccactcaatattaggaaggtgtacctaatgtttggtatactcagtgtctGCCCATTCAGAAAGTTTCCTGAAATAGCCTGTCTGGACTCCATCTCTTTAATAAGAATCAAACGCTCCTGTCATGATTTAATCTGTTTTCAGTGGCTAATGGTACATTATGTCTGTCATTATGGCGTCCTCTCTTTGAAGAACATATGCCACTGCAATCAAATGACCGCAGCAGCAGGTTTTGTGACACAAATATTTTTAGGAAAAGAGGAAGAAATCACACCGGACCTCGTTTTAATTATTTTGTGCATCGAACTAGGATCtgtattaaaaaaatgtatatgcaGAAAAGCTAACTGCATAACTTAACATAATATGaagagtggggcaaaaaagtatttagtcagccaccaattgtgcaagtactcccacttaaaaagatgagaggcctaattttcatcataggtacacttcaactatgacagacaaaatgagaaaaaaaaaatccagaaaatcacattgtaggattttttatgaatttatttgcaaattatggtggaaaatatgtatttggtcaataacaaaagtttatctctactttgtcattgccaacaaagggtatataacagaggtcaaacgttttctgtaagtcttcacaaggttttcacacactgttgctggtattttggcccattcctccatgcagatgtcctctagagcagtgatgttttggggctgttgctgggcaacacggactttcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggaccttgaaatgcttcttacgaagccactccttcgttgcccgtgcggtgtgtttgggatcattgtcattctgaaagacccagccacgtttcatcttcaatgcccttgctgatggaaggaggttttcattcaaaatctcacgatacatggccccattcattctttcctttacacggatcagtcgtcctggtcccttttcagaaaaacagtcccaaagcatgatgtttccacccccatgcttcacagtaggtatggtgttctttggatgcaacgcagtattctttgtcctccaaacatgacgagttgagtttttaccaaaaagttatattttggtttcatttgaccatatgccattctcccaatcttcttctggatcacccaaatgctctctagcaaacttcagacgggcctggacatgtactggcttaagcagggggacacgtctggcactgcaggatttgagaccctggcggcgtagtgtgttactgatggtaggctttgctactttggtcccagctttctgcaggtcattcactaggtccccccgtgtggttctgggatttttgctcaccgttcttgtgatcattttgaccccacggggtgagatcttgcgtggagccccagatcaagggagattatcagtggtcttgtatgtcttccatttcctaataattactcccacagttgatttcttcaaaccaagctgcttacctattgccgattcagtcttcccagcctggtgccggtctacaattttgtttctggtgtcctttgacagcactttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgttttttatactgataacaagttcaaacaggtgccattaatacaggtaacaagtggaggacagaggagactcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccataatttgcaaataaattcaataaaaatcctacaatgtgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610321 lncRNA upstream 43 69042621 ~ 69044027 (+) True G538931
TU610315 lncRNA upstream 25017 69018849 ~ 69019053 (+) True G538925
TU610259 lncRNA upstream 51231 68990838 ~ 68992839 (+) True G538878
TU610289 lncRNA upstream 82201 68961665 ~ 68961869 (+) True G538907
TU610288 lncRNA upstream 82616 68961215 ~ 68961454 (+) True G538906
TU610370 lncRNA downstream 70632 69215567 ~ 69216547 (+) True G538977
TU610397 lncRNA downstream 96358 69241293 ~ 69274586 (+) False G538991
TU610399 lncRNA downstream 96358 69241293 ~ 69274586 (+) False G538991
TU610403 lncRNA downstream 96358 69241293 ~ 69274586 (+) False G538991
TU610404 lncRNA downstream 96358 69241293 ~ 69274586 (+) False G538991
XM_036981775.1 mRNA upstream 25656 69007055 ~ 69018414 (+) False LOC110526955
XM_036980841.1 mRNA upstream 55931 68978897 ~ 68988139 (+) True LOC110526456
XM_036980843.1 mRNA upstream 67060 68965055 ~ 68977010 (+) False LOC110526457
XM_036980842.1 mRNA upstream 67060 68965062 ~ 68977010 (+) True LOC110526457
XR_005052454.1 mRNA upstream 88685 68955265 ~ 68955385 (+) True LOC118965123
XM_036980847.1 mRNA downstream 3395 69148330 ~ 69189966 (+) False LOC110526459
XM_021607451.2 mRNA downstream 3396 69148331 ~ 69189966 (+) False LOC110526459
XM_021607450.2 mRNA downstream 3397 69148332 ~ 69189966 (+) True LOC110526459
NM_001124523.1 mRNA downstream 77230 69222165 ~ 69228485 (+) True rhcg
XR_005052224.1 mRNA downstream 135250 69280185 ~ 69293194 (+) False LOC118964925
TU610304 other upstream 32108 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 41242 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 137223 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 232180 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 339374 68704398 ~ 68704696 (+) True G538561
TU610498 other downstream 216706 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 871407 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 891259 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 1337015 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1406860 70551795 ~ 70553920 (+) True LOC110526485

Expression Profile