RNA id: TCONS_00032830


Basic Information

Item Value
RNA id TCONS_00032830
length 2003
RNA type mRNA
GC content 0.52
exon number 4
gene id XLOC_016737
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42354643 ~ 42360414 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCACCGGAAACGACATCAGCCTCCACTAACAACAGTCTCCAAACGTTTACAAGGTTTTGGACCAAAAATCAAAACAACGCAGgcggccacaacgcagaggaCCGTGTAGGATGGCGAATTACCGGGCGTTTCACACCCAACTCGCGACCATCATGGAGACGCTGACTCGCGCCGCGGTGGCGGAAATCTGCGAGCTCGTGGACGACGGATACGCGGTTTTACACATCGAGATCTCGCGCCATCAGAAGGAGAACGAGGAGCTCCGGCGGAAACTGCAGCTCATTGAGTCGATCGTGGCGGCACGGGGGTACAGCGAGGAGAGCTCGGTAACGCGGGACAACAGTGCCCGAGAACCGCTGCTAGACCGGAAAACACCCGGAGGAGGAGAGTCGAGCAGCCGGGCCACAGCACTGGAGGTGCGGGAGTTTCGTGAGGAAGGAGATTTGATCCAAATGCAAATCAAAGAGGAAGGCTTCGAGCATCCGCCACTGGAAGatgaggatgaggatgaagACGAAGGTGAAAGCGTCTCCGCAGCGACTCACGACTCTCCTAAAGCGGATGTAGTTGAGTTGTCAGGACaagactcacacacactctcgcaCTCTCCGGACCAAGACAcccactctcacacactcacgtTTGCAGACACTCACTCTGGCGCCGACGAGTCTCAGCACTCCAGCATTGATCTGACTGTTTCTGATAATGCGTCCTTCTCCCTTTCTCAGACCGCTGCATCAGACGCTCGCGCCGCTCACCTCCACCGAGTGTTTCAGGAGGACCTGTGCATGAAGACGGACCTGGATCCGGTTTCTGATTGGGCCACACACTCAGTACGTAACACTCTGGCACACTTACAGAACTCTCCACAGGGAGTCGGCGGCTCAGACTCCATTGTGCCCCATAATTCTCCGTTGTTTGCTGCGCAGAGGCTGGTTGCGCTTGGGAATGTGTCTGGGCTGGGGCTCTACGGGCGTCTGGGCGCTTTACGCGGATGCGGGACCGGCAAGCGGCATTTCATCTGCTCAatctgtgggaagagtttcaccaCGTCTCAGAGTTTGGACACACACATGCGCATACACACAGGCGAGCGGCCCTATCGATGCGAGCAGTGCGGGAAACGCTTCACACAGTCCGGACACCTCACGGCGCACCAGACCGTCCACACCGGGGAACGACCGTACGAGTGCAGTCGCTGCGGGAAACGCTTCGCCGGGAAACAGTACCTGCGCATTCACACTAAAAAACACCATCCCGACCTGCACGCGCTCGCTCAACTACAGTCTCAAACGCAGCAGGACACACTACCCTCAGGGAGTTTGTAGATATTTCTAGATTCTAGAGGTGTCTTGAGAAGAGTTTCAAATAAAGACCTTCATATTCCAGAGTGTCATTTTGTAGCAGGACTTTTCCCAGGTCtttattttgatcaaattaaGCAGTGAGATGCATTGAAACACACTGAAGACAGCAGGCGTGCAATAGCAGGATGATGTGAGCACATGAGGACACTGATTTGTTAAGCGTGAAATGTGATCCTGGACCACAGAAGTAGACTCgtgatgcatttaggcatggacCAGAATAAGGCCGTACTTAAACCAAGTACAATTGTcctgaaccaggccaaagcacgcttgtcacccctcccgtctccccagtctacccgcactcacattacattcgggcacGCTTATATCACCGATGATGCGCagttcagtaagcgctttcgctcagcacagcggagatttctctagttatattgttttagttgtttgatatgcagtgacgcGCAGTTATATATTccgctgaacagatccgccacttttgaagctcataaacaatcataaagtcctcgtgctgcaggaattaggaggtttgctgaaggtgcagctgtcgtgcagtaaggggttttcgtctttaataatctacgacagtttgtgttcattgaacagaaagaatgattaataaatccatattaaacaatcccctaaaa

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-586 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDART00000140863

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033914 lncRNA downstream 323657 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00032816 lncRNA downstream 323657 42029551 ~ 42030986 (-) False XLOC_016728
TCONS_00032815 lncRNA downstream 324388 42027457 ~ 42030255 (-) False XLOC_016728
TCONS_00032813 lncRNA downstream 370887 41972537 ~ 41983756 (-) True XLOC_016727
TCONS_00033913 lncRNA downstream 583453 41751951 ~ 41771190 (-) True XLOC_016722
TCONS_00033915 lncRNA upstream 235510 42595924 ~ 42596530 (-) False XLOC_016743
TCONS_00033916 lncRNA upstream 235814 42596228 ~ 42597593 (-) True XLOC_016743
TCONS_00032846 lncRNA upstream 248967 42609381 ~ 42612407 (-) False XLOC_016744
TCONS_00033917 lncRNA upstream 268145 42628559 ~ 42628918 (-) False XLOC_016744
TCONS_00033918 lncRNA upstream 305488 42665902 ~ 42748662 (-) True XLOC_016745
TCONS_00032828 mRNA downstream 40425 42312889 ~ 42314218 (-) False XLOC_016736
TCONS_00032829 mRNA downstream 40425 42313429 ~ 42314218 (-) True XLOC_016736
TCONS_00032826 mRNA downstream 120082 42228741 ~ 42234561 (-) False XLOC_016735
TCONS_00032825 mRNA downstream 120118 42228741 ~ 42234525 (-) False XLOC_016735
TCONS_00032827 mRNA downstream 120159 42228745 ~ 42234484 (-) True XLOC_016735
TCONS_00032832 mRNA upstream 959 42361373 ~ 42375275 (-) False XLOC_016738
TCONS_00032834 mRNA upstream 22058 42382472 ~ 42396592 (-) False XLOC_016739
TCONS_00032835 mRNA upstream 24899 42385313 ~ 42393590 (-) True XLOC_016739
TCONS_00032836 mRNA upstream 38788 42399202 ~ 42415902 (-) False XLOC_016740
TCONS_00032838 mRNA upstream 59427 42419841 ~ 42492445 (-) False XLOC_016741
TCONS_00032811 other downstream 407747 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032808 other downstream 734531 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032800 other downstream 932921 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032799 other downstream 1142549 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032788 other downstream 1759149 40595375 ~ 40595494 (-) True XLOC_016708
TCONS_00032833 other upstream 11595 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032837 other upstream 43647 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032848 other upstream 312436 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032856 other upstream 601814 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032894 other upstream 1832385 44192799 ~ 44199697 (-) False XLOC_016779

Expression Profile

//