RNA id: TU610412


Basic Information

Item Value
RNA id TU610412
length 1883
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G538991
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69241293 ~ 69275222 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTATTTATTCTGTATACACATTCAATTCAAACAGCACAGAAGTCATGACAAGTCAGAACTCAATTACAACAACATGTTTTGTAAGACGTTTGTGTACAAGTATGTGTCCCTTTCTTTATTGCAGGTATGTTCAAAACTGTCTATCTCTCTGAATAAGGATAATAATAAAAATCAGGCAATGAGACGGCTATTAATGTGACTGCTTCAATACTGTATCTAACACATTTCATGTAGAACATTCCCTGATCACTATGAACACATGCAGATAATATTTGTAATAGGAAAAATGCAGCATTTGATGGATATACAGTAAATGGATGGAATCTTCACCAAACAATGTCTTTCTTTTCACTGTGACAGTCAAACATTAAACAACATTTGCAATACAGCCAGAGGGTGAGTCATTCACATTTATTTGCATAGAGTAGTCAGTTCTATTCATAAAGTAACTAATTGCACATGACAGAGGATAGACATCCAGAGAGCTTCTCTTGTAAACAGCCCACACATTAGGGCACTGTAGTGCTTCTCTGAAGCCCAGTACACTCCAGAGTACTCTAAAGAGTACAGTAGggaccaacccccccccccccccccccccccccccccccacacacacgcacactcacacacacgcacacacatgttgATCTCATCCCTTTTGATTTCACATCATACACACATTGTCTTACATTCTGCTGTAATGTTAAAAGTTATGTTGAAACTATACACTCTCAGCCGTGCAATATATCATCAGATAATCTGTTGTCCTCTGTTGTCCATTGTCCTTACAGTACATTTCTCCAAACATTGTCCTTACAGTAAATATCTCCAAACATTGTCCTTACAGTAAATATCTCCAAACATTGTCCTTACAGTAAATCTCTCCAAACATTGTCCTTACAATAAATATCTCCAAACATTGTCCTACAGTAAATATCTCCAAACATTGTCCTTACAATAAATATCGCCAAACATTGTCCTTACAGTAAATATCTCCATACATTGTCCTTACAGTAAATATCGCCAAACATTGTCCTATAGTAAATATCTCCAAACATTGTCCTTACAGTAAATTTCTACAAGCATTGTCTGTTAACTTTAGGGGGGATTCTTCAGTGCCCTCATTTCTCAGTGTTTGACTGGAGAGGATGCCAATGAGGAAGGGCCCAGGGCTCAGGGTTCAAGGCCCAGGGCTCAGGGCTCAGGGCTGATGGAAGAGTCTTCCCCTAGAGGTTGTCAACACCTGCAGGACCTGGAGACACAGAGATCAGAAACAACATGTAAGTCACCCATGTCACATTGCTTAACACAGGAACCCAGAACACAGCGGATTGGCTAACTGTAAACAGTGACTAGTATTGTTTTAGGTCACAGTAAGATGGAGTGATGACAATGATCTTGGGCTTGACGCTTGATGGAATCTAGTTTGGAAGCAGAGAATGTGTCAGTCAGTGAATGattggttaaaaaataaatacagtctTCCATCTATTTCTACTGGGTTATTCAAAACACATTAACACCAGTTTCGGTACTTGGAGTACGCCAATAGAAATGTTATGAATAATAAGGACAATTGTGTTACAGTATGTGCAAAGCAATTCCAGAGTGGATAGAAGCAGAAAAGTGACAGATTTTACCAATACAAAGAATCATTGTGAATTCATGTGGGATATTAAAGTTTTCTGATAACTGTGTTTATTGCTTCATCCTTAACTGTCATCAACTTAACAACTAAGACAAATCTAGCAGCCTCTCATCAAGTTTTGAATATACACGGGGCAGTCTACCCGCACCATTACCAATTTCACCAaattatatatagagagagagttccTGGACAATTTAATCCCACCGGGGGACTTGGCCAGACCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610370 lncRNA upstream 56457 69215567 ~ 69216547 (+) True G538977
TU610273 lncRNA upstream 128069 69044070 ~ 69144935 (+) True G538891
TU610321 lncRNA upstream 228977 69042621 ~ 69044027 (+) True G538931
TU610315 lncRNA upstream 253951 69018849 ~ 69019053 (+) True G538925
TU610259 lncRNA upstream 280165 68990838 ~ 68992839 (+) True G538878
TU610390 lncRNA downstream 5006 69280228 ~ 69287202 (+) False LOC118964925
TU610383 lncRNA downstream 6008 69281230 ~ 69285216 (+) False LOC118964925
TU610384 lncRNA downstream 6008 69281230 ~ 69285272 (+) False LOC118964925
TU610387 lncRNA downstream 6008 69281230 ~ 69287793 (+) False LOC118964925
TU610388 lncRNA downstream 6008 69281230 ~ 69287202 (+) False LOC118964925
NM_001124523.1 mRNA upstream 44519 69222165 ~ 69228485 (+) True rhcg
XM_036980847.1 mRNA upstream 83038 69148330 ~ 69189966 (+) False LOC110526459
XM_021607451.2 mRNA upstream 83038 69148331 ~ 69189966 (+) False LOC110526459
XM_021607450.2 mRNA upstream 83038 69148332 ~ 69189966 (+) True LOC110526459
XM_036980845.1 mRNA upstream 139388 69030882 ~ 69133616 (+) True LOC110526458
XR_005052224.1 mRNA downstream 4963 69280185 ~ 69293194 (+) False LOC118964925
trnar-acg-7 mRNA downstream 27110 69302332 ~ 69302404 (+) True trnar-acg-7
XM_036980851.1 mRNA downstream 112103 69387325 ~ 69413204 (+) False LOC110526466
XM_036980850.1 mRNA downstream 112103 69387325 ~ 69422563 (+) True LOC110526466
XM_021607458.2 mRNA downstream 166147 69441369 ~ 69526649 (+) False LOC110526467
TU610304 other upstream 261042 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 270176 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 366157 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 461114 68811119 ~ 68811890 (+) True G538607
TU609862 other upstream 568308 68704398 ~ 68704696 (+) True G538561
TU610498 other downstream 86419 69361641 ~ 69367642 (+) True G539068
TU611493 other downstream 741120 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 760972 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 1206728 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 1276573 70551795 ~ 70553920 (+) True LOC110526485

Expression Profile