RNA id: TU610682



Basic Information


Item Value
RNA id TU610682
length 501
lncRNA type intronic
GC content 0.50
exon number 3
gene id G539239
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69686948 ~ 69687800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctgtatatagcccccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtactccctgtatatagcctccacattgactctttaccggtactccctgtatatagcttccacattgactctgtaccggtaccccctgtatatagcctgcacattgactctttactggtaccccctgtatatagcctccacattggctctgtaccggtactccctgtatatagcctccacatggactctttaccggtaccccctgtatatagcctccacattgactctgtaccggtactccctgtatatagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtaccccctgtatacagcctccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtacccctgtatatagcctccacattgactctgtacccg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU610655 lncRNA upstream 26643 69658498 ~ 69660305 (+) True G539213
TU610619 lncRNA upstream 136228 69547385 ~ 69550720 (+) True mvda
TU610571 lncRNA upstream 209609 69474348 ~ 69477339 (+) True G539139
TU610570 lncRNA upstream 215706 69469984 ~ 69471242 (+) True G539138
TU610535 lncRNA upstream 259161 69408748 ~ 69427787 (+) True G539105
TU610704 lncRNA downstream 32136 69719936 ~ 69720174 (+) True G539258
TU610711 lncRNA downstream 57663 69745463 ~ 69745782 (+) True G539265
TU610718 lncRNA downstream 70086 69757886 ~ 69758091 (+) True G539272
TU610724 lncRNA downstream 74745 69762545 ~ 69762761 (+) True G539278
TU611306 lncRNA downstream 92384 69780184 ~ 69780410 (+) True G539783
XM_036980856.1 mRNA upstream 32559 69642275 ~ 69654389 (+) False LOC110526472
XM_036980857.1 mRNA upstream 32559 69643441 ~ 69654389 (+) True LOC110526472
XM_036980861.1 mRNA upstream 44829 69611784 ~ 69642119 (+) False LOC110526473
trnav-cac-7 mRNA downstream 12265 69700065 ~ 69700137 (+) True trnav-cac-7
XM_021607473.2 mRNA downstream 12487 69700287 ~ 69708734 (+) True gas8
XM_021607476.2 mRNA downstream 36698 69724498 ~ 69732656 (+) False LOC110526477
XM_021607474.2 mRNA downstream 36699 69724499 ~ 69732656 (+) True LOC110526477
XR_005052225.1 mRNA downstream 51819 69739619 ~ 69756833 (+) True LOC118964926
TU610498 other upstream 319306 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 674986 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 684120 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 780101 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 875058 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 328542 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 348394 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 794150 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 863995 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 927725 70615525 ~ 70621474 (+) False cmc2

Expression Profile