RNA id: TU610718


Basic Information

Item Value
RNA id TU610718
length 206
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G539272
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69757886 ~ 69758091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGCTACACATGACTTTTAACGAGCCAATGAGAGAGGAGGGTGTTGAGGATGAACATCTGGGATAAGAGGTAAAGAATATTCTTGCTAATTCCGAACCACTATAATGAGTGATATCTTGAAGTAGCACAGGTGGGGAAGAGTGCAGGTGGGCAGGCAGACTAGGAGTTGGTTTCATAAAAAGAGATTTGGTGATACGGAATTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610711 lncRNA upstream 12104 69745463 ~ 69745782 (+) True G539265
TU610704 lncRNA upstream 37712 69719936 ~ 69720174 (+) True G539258
TU610682 lncRNA upstream 70086 69686948 ~ 69687800 (+) True G539239
TU610655 lncRNA upstream 97581 69658498 ~ 69660305 (+) True G539213
TU610619 lncRNA upstream 207166 69547385 ~ 69550720 (+) True mvda
TU610724 lncRNA downstream 4454 69762545 ~ 69762761 (+) True G539278
TU611306 lncRNA downstream 22093 69780184 ~ 69780410 (+) True G539783
TU611310 lncRNA downstream 27205 69785296 ~ 69785615 (+) True G539787
TU611329 lncRNA downstream 45087 69803178 ~ 69803444 (+) True G539806
TU611366 lncRNA downstream 83837 69841928 ~ 69842158 (+) True G539843
XR_005052225.1 mRNA upstream 1053 69739619 ~ 69756833 (+) True LOC118964926
XM_021607476.2 mRNA upstream 25230 69724498 ~ 69732656 (+) False LOC110526477
XM_021607474.2 mRNA upstream 25230 69724499 ~ 69732656 (+) True LOC110526477
XM_021607473.2 mRNA upstream 49152 69700287 ~ 69708734 (+) True gas8
trnav-cac-7 mRNA upstream 57749 69700065 ~ 69700137 (+) True trnav-cac-7
XM_021607491.2 mRNA downstream 268071 70026162 ~ 70028929 (+) True emc8
XM_021604994.2 mRNA downstream 278897 70036988 ~ 70038457 (+) False LOC110525047
XM_036980865.1 mRNA downstream 291059 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA downstream 291059 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA downstream 291059 70049150 ~ 70058063 (+) False LOC110526484
TU610498 other upstream 390244 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 745924 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 755058 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 851039 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 945996 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 258251 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 278103 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 723859 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 793704 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 857434 70615525 ~ 70621474 (+) False cmc2

Expression Profile