RNA id: TU611306


Basic Information

Item Value
RNA id TU611306
length 227
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G539783
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69780184 ~ 69780410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTAGACTGCTCCACTTTACTGGATGTTCTTtactgaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcattgactCACACAGTAGCTGTTTTAGTATGTGCAAATTATTCCAGTGTTTAAAAGGCCCTGGGAATGTGATTTTCCTTGGTATCCCCAAGTTCACATGTATTTGGGATACTCCACAATGTGGCTTGTGCCACGGTTCTATACTGGTTAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU610724 lncRNA upstream 17423 69762545 ~ 69762761 (+) True G539278
TU610718 lncRNA upstream 22093 69757886 ~ 69758091 (+) True G539272
TU610711 lncRNA upstream 34402 69745463 ~ 69745782 (+) True G539265
TU610704 lncRNA upstream 60010 69719936 ~ 69720174 (+) True G539258
TU610682 lncRNA upstream 92384 69686948 ~ 69687800 (+) True G539239
TU611310 lncRNA downstream 4886 69785296 ~ 69785615 (+) True G539787
TU611329 lncRNA downstream 22768 69803178 ~ 69803444 (+) True G539806
TU611366 lncRNA downstream 61518 69841928 ~ 69842158 (+) True G539843
TU611377 lncRNA downstream 74141 69854551 ~ 69854782 (+) True G539854
TU611385 lncRNA downstream 83593 69864003 ~ 69864220 (+) True G539862
XR_005052225.1 mRNA upstream 23351 69739619 ~ 69756833 (+) True LOC118964926
XM_021607476.2 mRNA upstream 47528 69724498 ~ 69732656 (+) False LOC110526477
XM_021607474.2 mRNA upstream 47528 69724499 ~ 69732656 (+) True LOC110526477
XM_021607473.2 mRNA upstream 71450 69700287 ~ 69708734 (+) True gas8
trnav-cac-7 mRNA upstream 80047 69700065 ~ 69700137 (+) True trnav-cac-7
XM_021607491.2 mRNA downstream 245752 70026162 ~ 70028929 (+) True emc8
XM_021604994.2 mRNA downstream 256578 70036988 ~ 70038457 (+) False LOC110525047
XM_036980865.1 mRNA downstream 268740 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA downstream 268740 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA downstream 268740 70049150 ~ 70058063 (+) False LOC110526484
TU610498 other upstream 412542 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 768222 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 777356 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 873337 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 968294 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 235932 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 255784 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 701540 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 771385 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 835115 70615525 ~ 70621474 (+) False cmc2

Expression Profile