RNA id: TU611329


Basic Information

Item Value
RNA id TU611329
length 267
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G539806
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69803178 ~ 69803444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaacctggacacctacaaatcagccgggctagacaatctggaccctctctttttaaaattatctgccgaaattgttgcaacccctattactagcctgttcaacctctctttcgtatcgtctgagattcccaaagattggaaagctgccgcggtcatccccctcttcaaagggggagacactctagacccaaattgctacagacctatatctatcctaccctgcctttctaaggtcttcgaaagccaagtcaacaaacagatcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611310 lncRNA upstream 17563 69785296 ~ 69785615 (+) True G539787
TU611306 lncRNA upstream 22768 69780184 ~ 69780410 (+) True G539783
TU610724 lncRNA upstream 40417 69762545 ~ 69762761 (+) True G539278
TU610718 lncRNA upstream 45087 69757886 ~ 69758091 (+) True G539272
TU610711 lncRNA upstream 57396 69745463 ~ 69745782 (+) True G539265
TU611366 lncRNA downstream 38484 69841928 ~ 69842158 (+) True G539843
TU611377 lncRNA downstream 51107 69854551 ~ 69854782 (+) True G539854
TU611385 lncRNA downstream 60559 69864003 ~ 69864220 (+) True G539862
TU611390 lncRNA downstream 64600 69868044 ~ 69868345 (+) True G539867
TU611394 lncRNA downstream 76050 69879494 ~ 69879880 (+) True G539871
XR_005052225.1 mRNA upstream 46345 69739619 ~ 69756833 (+) True LOC118964926
XM_021607476.2 mRNA upstream 70522 69724498 ~ 69732656 (+) False LOC110526477
XM_021607474.2 mRNA upstream 70522 69724499 ~ 69732656 (+) True LOC110526477
XM_021607473.2 mRNA upstream 94444 69700287 ~ 69708734 (+) True gas8
trnav-cac-7 mRNA upstream 103041 69700065 ~ 69700137 (+) True trnav-cac-7
XM_021607491.2 mRNA downstream 222718 70026162 ~ 70028929 (+) True emc8
XM_021604994.2 mRNA downstream 233544 70036988 ~ 70038457 (+) False LOC110525047
XM_036980865.1 mRNA downstream 245706 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA downstream 245706 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA downstream 245706 70049150 ~ 70058063 (+) False LOC110526484
TU610498 other upstream 435536 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 791216 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 800350 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 896331 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 991288 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 212898 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 232750 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 678506 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 748351 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 812081 70615525 ~ 70621474 (+) False cmc2

Expression Profile