RNA id: TCONS_00032835


Basic Information

Item Value
RNA id TCONS_00032835
length 1147
RNA type mRNA
GC content 0.53
exon number 6
gene id XLOC_016739
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42382472 ~ 42396592 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGCCAAAAGCAGCCGTGCGCATATTGAGCAACGTGACGTTTTTGTTCGTCAGTTTGTCGTATACAGCAGAATGTGCCATCGTCACAGCCTTCATCACTTTCATCCCCAAATTTATTGAATCTCAGTTTGGTGTTCCAGCATCCAGTGCCAGCATTTACACAgGTCTGATCATCGTACCCAGTGCAGGTGTTGGCATATTTTTAGGTGGTTACATTATTAAGAAACTCAAACTGGGCGCAAGAGAAGCTGCGAAGTTGGCCATGATCTGCAGCGGCGTGTCTTTGCTCTGCTTCTCCACGCTTTTCATCGTCGGCTGCGAAAGCATCAACCTCGGTGGAATCAACATCCCTTACACCACTGGGCCCACACTGACTCTGTCTCACCGGAACCTGACGGGAAGTTGTAATGTGAACTGTGGCTGTAAGATTCATGAATACGCACCCGTCTGCGGCTCTGACGGCATCACATACTTCAACCCCTGTCTGGCTGGATGCAGCAACATCGCCAACCACACCTCAGGAATCAGAAACTATTCGGACTGCGCATGCGTTCAGAGTCGTCAGGTGATCACGCCGTCAGGAGGAAACCACGAGCTGCAGCTGGTGATCGTCAAGACGTACCTAAACGAGAACGGCTTCGCTCTGGCGGGAAAGTGTGAACGCACCTGTGGGACTCTCATCACCTTCCTCATCTTCCTCTTCATCGTCACGCTCATCACCGCCTGCGCTCAGCCCTCCGTCATCATTGTTACGCTCAGGTCAGTGGATGAAGAGGACAGGCCGTTTGCTCTGGGAATGCAGTTTGTTCTTCTCAGGACTCTTGCCTACATCCCCACTCCTATCTATTTTGGAGCTGTGATTGACACCACCTGTATGCTGTGGCAGCAGGACTGTGGTTTCCATGGGTCCTGCTGGGAGTACGATGTCACTTCCCTCCGCTTCGTCTACTTTGGTCTAGCAGCGAGCTTGAAGTTCCTGGGCTTCCTGTTCATCTTCCTCACTTGGTATTCGCTGAAGCGTCGCGAGgagcagacgcacacacacacgcaccagcACACACTTTCCACGCTGGACACAGTAAGCCATCTCATCTGCCACGCTGGAGGCCACAAAGGCCACGCTCGCACCCGCTCATGTCCCGTCTT

Function

GO:

id name namespace
GO:0035773 insulin secretion involved in cellular response to glucose stimulus biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0043252 sodium-independent organic anion transport biological_process
GO:0030141 secretory granule cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015347 sodium-independent organic anion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090316-1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane and secretory granule. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; gill; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLCO5A1 (solute carrier organic anion transporter family member 5A1).

Ensembl:

ensembl_id ENSDART00000135529

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033914 lncRNA downstream 354327 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00032816 lncRNA downstream 354327 42029551 ~ 42030986 (-) False XLOC_016728
TCONS_00032815 lncRNA downstream 355058 42027457 ~ 42030255 (-) False XLOC_016728
TCONS_00032813 lncRNA downstream 401557 41972537 ~ 41983756 (-) True XLOC_016727
TCONS_00033913 lncRNA downstream 614123 41751951 ~ 41771190 (-) True XLOC_016722
TCONS_00033915 lncRNA upstream 202334 42595924 ~ 42596530 (-) False XLOC_016743
TCONS_00033916 lncRNA upstream 202638 42596228 ~ 42597593 (-) True XLOC_016743
TCONS_00032846 lncRNA upstream 215791 42609381 ~ 42612407 (-) False XLOC_016744
TCONS_00033917 lncRNA upstream 234969 42628559 ~ 42628918 (-) False XLOC_016744
TCONS_00033918 lncRNA upstream 272312 42665902 ~ 42748662 (-) True XLOC_016745
TCONS_00032832 mRNA downstream 10038 42361373 ~ 42375275 (-) False XLOC_016738
TCONS_00032830 mRNA downstream 24899 42354643 ~ 42360414 (-) False XLOC_016737
TCONS_00032831 mRNA downstream 24984 42355759 ~ 42360329 (-) True XLOC_016737
TCONS_00032828 mRNA downstream 71095 42312889 ~ 42314218 (-) False XLOC_016736
TCONS_00032836 mRNA upstream 5612 42399202 ~ 42415902 (-) False XLOC_016740
TCONS_00032838 mRNA upstream 26251 42419841 ~ 42492445 (-) False XLOC_016741
TCONS_00032840 mRNA upstream 28800 42422390 ~ 42492201 (-) False XLOC_016741
TCONS_00032839 mRNA upstream 28800 42422390 ~ 42492201 (-) False XLOC_016741
TCONS_00032841 mRNA upstream 38574 42432164 ~ 42439487 (-) True XLOC_016741
TCONS_00032833 other downstream 10204 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 438417 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032808 other downstream 765201 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032800 other downstream 963591 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032799 other downstream 1173219 41211978 ~ 41212094 (-) True XLOC_016715
TCONS_00032837 other upstream 10471 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032848 other upstream 279260 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032856 other upstream 568638 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032894 other upstream 1799209 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 2129266 44522856 ~ 44524381 (-) True XLOC_016786

Expression Profile

//