RNA id: TU611398


Basic Information

Item Value
RNA id TU611398
length 307
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G539875
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69887174 ~ 69887480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaggatgctctcgattgtgcatctgtagaagtttgtgagtgcttttggtgacaagccgaatttcttcagcctcctgaggttgaagaggcgctgctgcgccttcttcacgatgctgtctgtgtgagtggaccaattcagtttgtctgtgatgtgtatgccggggaacttaaaacttgctaccctctccactactgttccatcgatgtggataggggggtgttccctctgctgtttcctgaagtccacaatcatctccttagttttgttgacgttgagtgtgaggttattttcctgacaccacactcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611396 lncRNA upstream 4785 69882150 ~ 69882389 (+) True G539873
TU611394 lncRNA upstream 7294 69879494 ~ 69879880 (+) True G539871
TU611390 lncRNA upstream 18829 69868044 ~ 69868345 (+) True G539867
TU611385 lncRNA upstream 22954 69864003 ~ 69864220 (+) True G539862
TU611377 lncRNA upstream 32392 69854551 ~ 69854782 (+) True G539854
TU611429 lncRNA downstream 51759 69939239 ~ 69939546 (+) True G539903
TU611430 lncRNA downstream 54033 69941513 ~ 69941729 (+) True G539904
TU611453 lncRNA downstream 87614 69975094 ~ 69975298 (+) True G539925
TU611457 lncRNA downstream 94202 69981682 ~ 69983517 (+) True G539927
TU611479 lncRNA downstream 114716 70002196 ~ 70002823 (+) True G539949
XR_005052225.1 mRNA upstream 130341 69739619 ~ 69756833 (+) True LOC118964926
XM_021607476.2 mRNA upstream 154518 69724498 ~ 69732656 (+) False LOC110526477
XM_021607474.2 mRNA upstream 154518 69724499 ~ 69732656 (+) True LOC110526477
XM_021607473.2 mRNA upstream 178440 69700287 ~ 69708734 (+) True gas8
trnav-cac-7 mRNA upstream 187037 69700065 ~ 69700137 (+) True trnav-cac-7
XM_021607491.2 mRNA downstream 138682 70026162 ~ 70028929 (+) True emc8
XM_021604994.2 mRNA downstream 149508 70036988 ~ 70038457 (+) False LOC110525047
XM_036980865.1 mRNA downstream 161670 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA downstream 161670 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA downstream 161670 70049150 ~ 70058063 (+) False LOC110526484
TU610498 other upstream 519532 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 875212 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 884346 68996083 ~ 69002828 (+) True G538877
TU610240 other upstream 980327 68906045 ~ 68906847 (+) True G538859
TU609930 other upstream 1075284 68811119 ~ 68811890 (+) True G538607
TU611493 other downstream 128862 70016342 ~ 70019477 (+) True G539959
TU611507 other downstream 148714 70036194 ~ 70039507 (+) True LOC110525047
TU611739 other downstream 594470 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 664315 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 728045 70615525 ~ 70621474 (+) False cmc2

Expression Profile