RNA id: TCONS_00032838


Basic Information

Item Value
RNA id TCONS_00032838
length 5397
RNA type mRNA
GC content 0.42
exon number 22
gene id XLOC_016741
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42419841 ~ 42492445 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGAAAATCACGGGCCGACGGCCGCTCCATACAAGGCAAGGTCGGGTGGGGAGCAGTTTAGGGAGCAGCGCTGATCCAATCATCTGCGCTCCGGGGAAGAGCCCGGAACCAAAGCGACGCCACTCGTTTTGTTTTCTGTCCAAATCGGTACGCGTCCGAGATGTTGCTGTAGAAACTCTGACGCTTCTGTAGTTGTTTAGTgttagttttgttgttgtttgttttggatTTGCTTACTTTGGAGATGAGTGCGTCAGTGAACGGAGTGGAGCCCAAACCCGCTCCAGCGGTCAGCCAGAACGGACCCGGGTCTCCTCCTCAGACCCCCAAAGATGTCACACCACCGGAGCTTGAACTACCGGACGAGGAGCCGCAGTCTTCGGTCACGGAAGCCACGCAGATGGGGATTAAGTTCGCAAAGACGTTCCTACTGATTTTCCCTATATACTTGCTGGGATATCTGGAGTTCAGTTTCAGCTGGGTTTTGATCGGCCTGGGATTGGTGTTTTGGCTGAAACGGAATCAGGGCAGCAGGTTCGCCCGGGTGAACCAGGCGATGGCGTTTCTGGAGCAGGAGGAGCGCGCGGTGCGGCAGACCATCCGGAGCTCAGAGCTGCCGCCGTGGGTTCATTTTCCAGATGTGGAGAGAGTGGAGTGGCTcaataagACTGTGCAGCAGATGTGGCCGTATATTTGTCAGTTTGTAGAGAAAATCTTCAAAGAGACCATTGAACCAGCTGTGCAGGGAGCAAACACGCACCTTAGTACTTTCACCTTCTCCAAGATAGATATGGGGGACAAGCCTCTCAGGGTGGATGGAGTGAAAGTTTATACAGAGAATGTCGATAAACGACAGATTATTATGGACCTACAGATcaaTTTTGTTGGAAACACTGAAATTGATGTGGACATCAAGAAATACTACTGCCGTGCAGGAATCAAAAGTATTCAGCTGAATGGGGTGTTGAGGGTCATCATGGAGCCGCTTTTAGGAGACATGCCTCTGGTCGGCGCACTGTCTGTGTTCTTCCTCAAGAAACCTtTTCTGGACATTAATTGGACGGGTCTCACAAATATGCTGGACATTCCTGGAGTAAATTCTCTGTGTGACAATGTTATTCAGGACATCATAAACGGTTGCCTTGTGAACCCAAACAAAATCACCATCCCGCTGGCAGATGATGCTCTCATTAGCAAACTTCGCTTCCCAATGCCGAGgGGCATTCTGCGAGTTCACTTTCTGGAGGGACAGGACCTGTTATCGAAGGACACGTATATGGGAGGTTTGATTAAAGGAAAGTCAGACCCGTATGGAGTCATTCAAATCAACAATCAGCTCTTCAGATCCAAAATCATCAAAGATTCCTTAAACCCTAGGTGGAATGAAGTATACGAGGCGATTGTGTATGATGGTCAAGGACAGGTTGTGTTCATAGAGCTGTTTGATGAGGATACGGATCATGATGATTTTCTGGGAAGCCTCACCATGGAAATAGATGAGATACAGAAGCAACAGAAAGTTGATGAGtGGTTTGATCTTATCGGTGTTCCTAACGGAAAGCTCCACGTGAAGGCTGAATGGCTTTCTCTTCACCCAACACCAGATAAACTTGATGAGGTTTTAAGCAGCATTAAAGCAGATAAAGGACAGGCCAACGATGGACTGTCATCAGCATTACTGCTAGTGCACCTGGACTCAGCCAAAAATCTGCCATCTGGAAAAAAGGTCACCAGTGTGCCCAATCCATTCGTCCAGTTCACTGTCGGACACAGATCGTTTGAAAGCAAGACAAGATTTAAAACAATTGAGCCGGTTTGGGAGGAGACCTTCACATTCCTCATCCACAATCCAAAGTGTCAAGACCTCGAAGTCGAgGTAAAGGATGAGAAACACGAGTGTTCTCTGGGGACGATCACTCTTCCTCTGTCTCAGCTGCTGAAGGAGAAACAGATGACGATGAGTCAGAGATTCCCACTCAAGAACTCAGGACCCGGTTCTACACTTAAAATGAAGATGGCACTTAGGATTCTGTCTCTGGATAAATTGGCAGCATCAGATAAACCGTCCTCAGCTCAGGTCCACAGGGCCGGCTCTGTGAGGAAGACATCCAACGCTACTCCTCAGCGGCCTGCAGTTTCAGAGCCTGCAAAAACATCCAAAACCCAGCAGCCCGCACCTGCACCCCGAACCCAGCCCACCCCAACTCCCTCTCCACGGGTGGAACCCGTAACAGACCGCAAACCGCTGGAGGAATCACCCCCACATCTGGCTAAATCAGGCAAGAGCATGTCTAACCTGGCCATTTCTGGCTCCAATCTCCACCTGAACAGCAAAGAGCAAACGCCCAGCATCGCCTCAGACATCTCCAATCTCGCCGCCACACAGGAGCTCCAGAAGACCATACAGCATTTACATAACGGCGCTTCACCGGGTTTCGCTCCTCTGGGTGAAATTGAGCTAACCATCAGACACAGTCCCCAAAGAAATAAGCTGATTGTCGTGGTACACAAATGCAGAAATCTGATCTCTGCTTCTCAAAATGGTTCCGATCCATACGTGCGTTTGTATTTACTACCTGACAAGCGGCGCTCTGGACGCAGAAAAACAAGCACAGCGAAGAAAACAGTGAACCCCGTCTTTGATCAAACgtttgAGTTCACAGTGTCCATCGTGGAGTTGCAGAAGAGAACTCTAGATGTGGCCGTGAAGAATGGAGGAGGAATACTGGCAAAACACAGAGGGCTGCTAGGAAAGgtgATAGTTGAATTTAACCTCGAGGACCCATCAAAGAGCTCAACGCAATGGTATGAGCTTTCAGTGGACGGATTTAAGCGACCATCACCGTAATCATAGAAAACTACAacatgaagaaaaagaaaaactacaaATCCCTGCGCAAGACTCCAAACCTCAGCTATGTTTAAGCCATGTGTTTTGGCCTGTGGGCAGAATTCATACTTCTTGAATCACTTTTAATAGATTTGTAGTAggaaaggagaaaaaaaactctaCTGCTGTTATGTGCACTGACTTGGCAAGAGTAAAAGAGAAAGTTTTAAAGGGAAATAGTTCATTTGTTGGATtgatttgggtcacactttattttgttggtctgtttgttgaatttaagttacattgcatctatatgccaactgattctcattagattataagtagactttaaggttggggttagggttagtttaagttgacatgtacttgcaaagttacttatagtcaattaaatgtctgttgaaggagcagtattagctgatattaagcagacagtctactaatactcaaatggaccatcataataaagtgttaccttgatTTGTTGTTTACACAATAAAGACTTTTAAAGCAAGAGTGAAAAACTCTAAGAGCATCCATCAAACATGCAATAATGGTGGagtgattatataaaatatacagctATGGGGGAAAAAATGCTTAGAAATTCAACTTTTTTCTGAATTTGTGATTTATGGTTATGCTGTTTTTTTCTGCAAGccactgatgacatttcttctactttttaaaataaggttttacatttttaagcaaCATAATATCAGTGTTTTAACTTCTGGGAAGTTAAAACTCTGTCAAATTTCAAAGGACACGaacttgtttgagttttttttctccctagagcaaagttattttgaaaaatgctggaaactggtaaccattgactttctatagtatttgttcgTTTTGGTTATAggcttctaacatttttcaaagtatcttttgtgttcaacggggaaaatatttgtaaaggtttggaagcacttgagggtttaaactatttttaaaaaatgaatttattacaTTGACTATCATTTCCTGCAACCATATGGACCATATTTATTTGAAGTTTGAAAGAAAAGTCCTCAAACTTTACAGAATCAAAcagatattaacattttactcaaaaagACCATCTCTAATGAATCCAGAAAAACTTTTTATGTGATCTTTTCCatagctgtgtgtgtatatgcatctATTACTGAGCTCAgactgtaaatacataaataaatagtaaatactCTAATATTTGGAAAGGTTTGATTAATAATAACCCGAAGAGTTCTTGTTAAACAAGCACTCGCGCTTGCTTTGAAAGTGTTATACATTAtaacaatggtctcaaactcaattcctggagggccgcagctctgcataattgcacctccaactcacacctgcttattAGTCTCTAGTAGttttaaacaccttgattagttggatctgctgtgtttgattaggggtggagcaaaactgcagtgctgtggccctccaggaatcgagtttgagacctatgcattATAATCTCCGTCAATGTCTACAGATGCTCCTTTTAGGAGACAGATCTACCAAAGAAGTGCTTGGCTCATCGATGTAAAGTTTGGTGAGTTTCTAATTAAACCAAATAGGCACCTACATGtttttgtaacactttataattcATGACttgtagttaatgttaattaacatTCACTAACATGAGCAAAGATCTTAATAAAGGATTCATGTTTGTCAATGTTAGAAAATGAAAACAGTCATttattgttagtttattttaacgcacagtgcattaactaatgttatttCTAAACAatccattagtaaatgttgatctaTGATTGGTGAATGCTGTGCGAgcatcatgttagtaaatacatcagcAAACATTAACTCCCCATcctgtattgtaaagtgttaccatgtctTGCACCCCCAAGTGttcacatatatataaataattgtgtGTTTATACGTTCTCTTGTGTGGTGCAGCACAGCACAAAACATAACCATGTCACATAACCATGACTGTCCAACGTTGCAATAGCTCTGAATAATATTTAGTGTAACACTCAATTCACAAATTCACTCCTCTTCCAGAAACACCCGTTCACCTCTCAGCCCTTGTACTCCCGCTGTGCTTCTACACTCATTGAGTATTTTTGCGTGTGTAGTCTGGTGTTAAAGTGAAGGTTGCGGTTTGGTCTTCTGTAGCGTCACTGAGCTGAGCTTGTGCTATGCAGACGGTCAGACCTCAAACTGTTCTGACCTTATTCCTGTCAGCAAGAATGTGTTTTTATTCGATAAATTATTGTGTATAATATGTCAGattttattatgcttttattattgtttatgattaATGCAGACGTATGCAGTCAGAGCACCTCTCTCTGCTGAGCTTGCCTTAttgatgtatatataaataaatatatatatgtatgtatttccTGTGCCTTATGACCAACAATATACTTGCCTTAGAGGATATTTGGCATCAGATACAGGATTGTGAAGTCTCTGTATTTGATGATATCCAAGGTTTTCTTTTCAATAAACAGTTGCTTCTGTACAAGTAAA

Function

GO:

id name namespace
GO:0061817 endoplasmic reticulum-plasma membrane tethering biological_process
GO:0006869 lipid transport biological_process
GO:0031227 intrinsic component of endoplasmic reticulum membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008429 phosphatidylethanolamine binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0008289 lipid binding molecular_function
GO:0031210 phosphatidylcholine binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-588 Predicted to enable calcium ion binding activity and phospholipid binding activity. Predicted to act upstream of or within endoplasmic reticulum-plasma membrane tethering and lipid transport. Predicted to be located in endoplasmic reticulum and plasma membrane. Predicted to be integral component of membrane. Predicted to be extrinsic component of cytoplasmic side of plasma membrane and intrinsic component of endoplasmic reticulum membrane. Orthologous to human ESYT2 (extended synaptotagmin 2).

Ensembl:

ensembl_id ENSDART00000139929

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033914 lncRNA downstream 388855 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00032816 lncRNA downstream 388855 42029551 ~ 42030986 (-) False XLOC_016728
TCONS_00032815 lncRNA downstream 389586 42027457 ~ 42030255 (-) False XLOC_016728
TCONS_00032813 lncRNA downstream 436085 41972537 ~ 41983756 (-) True XLOC_016727
TCONS_00033913 lncRNA downstream 648651 41751951 ~ 41771190 (-) True XLOC_016722
TCONS_00033915 lncRNA upstream 103479 42595924 ~ 42596530 (-) False XLOC_016743
TCONS_00033916 lncRNA upstream 103783 42596228 ~ 42597593 (-) True XLOC_016743
TCONS_00032846 lncRNA upstream 116936 42609381 ~ 42612407 (-) False XLOC_016744
TCONS_00033917 lncRNA upstream 136114 42628559 ~ 42628918 (-) False XLOC_016744
TCONS_00033918 lncRNA upstream 173457 42665902 ~ 42748662 (-) True XLOC_016745
TCONS_00032836 mRNA downstream 3939 42399202 ~ 42415902 (-) False XLOC_016740
TCONS_00032834 mRNA downstream 23249 42382472 ~ 42396592 (-) False XLOC_016739
TCONS_00032835 mRNA downstream 26251 42385313 ~ 42393590 (-) True XLOC_016739
TCONS_00032832 mRNA downstream 44566 42361373 ~ 42375275 (-) False XLOC_016738
TCONS_00032830 mRNA downstream 59427 42354643 ~ 42360414 (-) False XLOC_016737
TCONS_00032842 mRNA upstream 4053 42496498 ~ 42552666 (-) False XLOC_016742
TCONS_00032843 mRNA upstream 4078 42496523 ~ 42558549 (-) True XLOC_016742
TCONS_00032844 mRNA upstream 112807 42605252 ~ 42704863 (-) False XLOC_016744
TCONS_00032845 mRNA upstream 112947 42605392 ~ 42628028 (-) False XLOC_016744
TCONS_00032847 mRNA upstream 162295 42654740 ~ 42705284 (-) False XLOC_016744
TCONS_00032837 other downstream 4053 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 44732 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 472945 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032808 other downstream 799729 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032800 other downstream 998119 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032848 other upstream 180405 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032856 other upstream 469783 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032894 other upstream 1700354 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 2030411 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 2265604 44758049 ~ 44760347 (-) True XLOC_016790

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000098_03141120_03176025.mRNA True 3620 mRNA 0.47 27 CI01000098 3140689 ~ 3176025 (-)