RNA id: TU611562


Basic Information

Item Value
RNA id TU611562
length 1429
lncRNA type intronic
GC content 0.47
exon number 4
gene id G540020
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70113703 ~ 70118208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgtgtgtggtgtacgaggtagtgtgtgtggcgtacaAGGTAGTGTGTGGCGtatgttgtagtgtgtgtggtgtatgcagtagtgtgtggtgtatgtagtagtgtgtgtggtgtatgtagtagcgtgtgtggtgtatgcagtagtgtgtggtgtatgcagtagtgtgtggtgtatgtagtagcgtgtgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgcagtagtgtgtgtggtgtatgtagtagtgtgtgtggtgtatgtagtagtgtgtgtgtgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtaggttgtggcgtatgtagtaggtTGTGGCgtatgtggtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggtgtatgtagTCGTGTGTGGCGTatttagtagtgtgtgtggcgtatgtagtagtgtgtgtggtgtatgtagtagcgtgtgtggtgtatgcagtagtgtgtgtgtgtggtgtatgtattagtgtgtgtggcatatgcagtagtttgtgtggcgtatgtagtagtgtgtgtggcgtatgcagtagtgtatgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggtgtatgtagtagtgtgtgtggtgtatgtagtagcgtgtgtggtgtatgcagtagtgtgtggtgtatgtagtagtgtgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggtgtatgcagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtgtgtgtggcgtacgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggtgtatgtagtagtgtgtgtgtgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtaggtTGTGGCgtatgtggtagtgtgtgtggtgtatgtagtcgTGTGTGTGGCGTatttagtagtgtgtgtggtgtatgtaatagtgtgtgtggcgtatgtagtcgtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagggtatgtggtgtatgtagtagtgtgtgtggtgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtggcgtatgtagtagtgtgtgtggcgtatgtagtagtgtgtgtggcgtatgcagtagtgtgtgtggcgtatgtagtcgTGTGTATGTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611566 lncRNA upstream 2479 70109167 ~ 70111224 (+) True G540021
TU611559 lncRNA upstream 7697 70104655 ~ 70106006 (+) True G540017
TU611557 lncRNA upstream 10793 70102603 ~ 70102910 (+) True G540015
TU611553 lncRNA upstream 15758 70096415 ~ 70097945 (+) True G540011
TU611545 lncRNA upstream 22720 70089960 ~ 70090983 (+) True G540008
TU611604 lncRNA downstream 84395 70202603 ~ 70203369 (+) True G540059
TU611605 lncRNA downstream 85535 70203743 ~ 70205028 (+) True G540060
TU611607 lncRNA downstream 85772 70203980 ~ 70211239 (+) True G540061
TU611608 lncRNA downstream 87949 70206157 ~ 70208312 (+) False G540062
TU611609 lncRNA downstream 88114 70206322 ~ 70210419 (+) True G540062
XM_036980865.1 mRNA upstream 55640 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA upstream 55640 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA upstream 55640 70049150 ~ 70058063 (+) False LOC110526484
XM_021604994.2 mRNA upstream 75246 70036988 ~ 70038457 (+) False LOC110525047
XM_021607491.2 mRNA upstream 84774 70026162 ~ 70028929 (+) True emc8
XM_036980869.1 mRNA downstream 433555 70551763 ~ 70558098 (+) False LOC110526485
XM_021607495.2 mRNA downstream 476539 70594747 ~ 70599188 (+) False si:ch73-103b9.2
XM_021604952.2 mRNA downstream 497268 70615476 ~ 70621510 (+) False cmc2
XM_021604956.2 mRNA downstream 497268 70615476 ~ 70621510 (+) False cmc2
XM_021604954.2 mRNA downstream 497283 70615491 ~ 70621510 (+) False cmc2
TU611507 other upstream 74196 70036194 ~ 70039507 (+) True LOC110525047
TU611493 other upstream 94226 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 746061 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 1101741 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 1110875 68996083 ~ 69002828 (+) True G538877
TU611739 other downstream 363742 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 433587 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 497317 70615525 ~ 70621474 (+) False cmc2
TU611817 other downstream 497317 70615525 ~ 70621474 (+) False cmc2
TU613619 other downstream 1681832 71800040 ~ 71804462 (+) True G541903

Expression Profile