RNA id: TU611609


Basic Information

Item Value
RNA id TU611609
length 250
lncRNA type intronic
GC content 0.40
exon number 3
gene id G540062
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70206157 ~ 70210419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtgtgtgtgtgttataggttctgaaggttatgtgtgtgtttgtgtgtgtgtgtgtgtgttataggttctgaagtttatgtgtgtgtttgtgtgtgtgtgtgttataggttctgaaggttatgtgtgtgtgtgtatgtgtgtgttataggttctgaagattatgtgtgtgtgtgtgtgttattggttctgaaggttatgcgtgtgtgtgtgtgtgtgtgtatgttacagggtctgaaggttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611605 lncRNA upstream 1294 70203743 ~ 70205028 (+) True G540060
TU611604 lncRNA upstream 2953 70202603 ~ 70203369 (+) True G540059
TU611562 lncRNA upstream 88114 70113703 ~ 70118208 (+) True G540020
TU611566 lncRNA upstream 95098 70109167 ~ 70111224 (+) True G540021
TU611559 lncRNA upstream 100316 70104655 ~ 70106006 (+) True G540017
TU611625 lncRNA downstream 26873 70237292 ~ 70237902 (+) True G540074
TU611629 lncRNA downstream 32507 70242926 ~ 70243325 (+) True G540077
TU611648 lncRNA downstream 67544 70277963 ~ 70278178 (+) True G540096
TU611649 lncRNA downstream 72323 70282742 ~ 70282959 (+) True G540097
TU611652 lncRNA downstream 80658 70291077 ~ 70291315 (+) True G540100
XM_036980865.1 mRNA upstream 148259 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA upstream 148259 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA upstream 148259 70049150 ~ 70058063 (+) False LOC110526484
XM_021604994.2 mRNA upstream 167865 70036988 ~ 70038457 (+) False LOC110525047
XM_021607491.2 mRNA upstream 177393 70026162 ~ 70028929 (+) True emc8
XM_036980869.1 mRNA downstream 341344 70551763 ~ 70558098 (+) False LOC110526485
XM_021607495.2 mRNA downstream 384328 70594747 ~ 70599188 (+) False si:ch73-103b9.2
XM_021604952.2 mRNA downstream 405057 70615476 ~ 70621510 (+) False cmc2
XM_021604956.2 mRNA downstream 405057 70615476 ~ 70621510 (+) False cmc2
XM_021604954.2 mRNA downstream 405072 70615491 ~ 70621510 (+) False cmc2
TU611507 other upstream 166815 70036194 ~ 70039507 (+) True LOC110525047
TU611493 other upstream 186845 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 838680 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 1194360 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 1203494 68996083 ~ 69002828 (+) True G538877
TU611739 other downstream 271531 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 341376 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 405106 70615525 ~ 70621474 (+) False cmc2
TU611817 other downstream 405106 70615525 ~ 70621474 (+) False cmc2
TU613619 other downstream 1589621 71800040 ~ 71804462 (+) True G541903

Expression Profile