RNA id: TU611652


Basic Information

Item Value
RNA id TU611652
length 239
lncRNA type intronic
GC content 0.51
exon number 1
gene id G540100
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70291077 ~ 70291315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGAGCGAGGTCGACCCCTGTGGCCCTATTTCAGCTCGTCTGTGAGTTAGGTCAGATCTCCACCTGACCTTTGACCCTGCTGGAGGCTCCACCTGTACTCCACAACTGCCATAGTCACGAGGTCAGGAGGTCAAACATGACTGGAGCTCAGAATGGCCTTGGGAACAGACAATCAAGGTCAGCACAAACAACCTCTTTCTCACTCTAgaatttttctctccctctccctatttcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611649 lncRNA upstream 8118 70282742 ~ 70282959 (+) True G540097
TU611648 lncRNA upstream 12899 70277963 ~ 70278178 (+) True G540096
TU611629 lncRNA upstream 47752 70242926 ~ 70243325 (+) True G540077
TU611625 lncRNA upstream 53175 70237292 ~ 70237902 (+) True G540074
TU611609 lncRNA upstream 80658 70206322 ~ 70210419 (+) True G540062
TU611653 lncRNA downstream 3839 70295154 ~ 70295551 (+) True G540101
TU611661 lncRNA downstream 22046 70313361 ~ 70313598 (+) True G540109
TU611662 lncRNA downstream 24304 70315619 ~ 70315847 (+) True G540110
TU611669 lncRNA downstream 53738 70345053 ~ 70345264 (+) True G540117
TU611716 lncRNA downstream 158047 70449362 ~ 70453410 (+) True G540158
XM_036980865.1 mRNA upstream 233014 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA upstream 233014 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA upstream 233014 70049150 ~ 70058063 (+) False LOC110526484
XM_021604994.2 mRNA upstream 252620 70036988 ~ 70038457 (+) False LOC110525047
XM_021607491.2 mRNA upstream 262148 70026162 ~ 70028929 (+) True emc8
XM_036980869.1 mRNA downstream 260448 70551763 ~ 70558098 (+) False LOC110526485
XM_021607495.2 mRNA downstream 303432 70594747 ~ 70599188 (+) False si:ch73-103b9.2
XM_021604952.2 mRNA downstream 324161 70615476 ~ 70621510 (+) False cmc2
XM_021604956.2 mRNA downstream 324161 70615476 ~ 70621510 (+) False cmc2
XM_021604954.2 mRNA downstream 324176 70615491 ~ 70621510 (+) False cmc2
TU611507 other upstream 251570 70036194 ~ 70039507 (+) True LOC110525047
TU611493 other upstream 271600 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 923435 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 1279115 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 1288249 68996083 ~ 69002828 (+) True G538877
TU611739 other downstream 190635 70481950 ~ 70484368 (+) True G540179
TU611726 other downstream 260480 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 324210 70615525 ~ 70621474 (+) False cmc2
TU611817 other downstream 324210 70615525 ~ 70621474 (+) False cmc2
TU613619 other downstream 1508725 71800040 ~ 71804462 (+) True G541903

Expression Profile