RNA id: TU611739


Basic Information

Item Value
RNA id TU611739
length 2419
RNA type TUCP
GC content 0.60
exon number 1
gene id G540179
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70481950 ~ 70484368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttaaatcggccctaattaatcggccttaattaatcggccattccgattaatcggccgacctctaacacaaacactcacaaactcacacaaacacaaacacacacacacacacacacacacacacacacacaaacactcaacaaacacatacacaaacactcacaaacccacacatacacacacacatacacacacaaaaaaacctaACTCCGACACCTAACTCCGACCCCTAACCCTGTCTTTACTCCACCCTTTCTGGTTCTAACTCACTCAAACTGTGACAAGTTCCCTTtgtctctgcctccgtctctgcctccgtctctgtctccgcCTCTGTCTCCGCCTCTGTctccgcctctgtctctatctccgtctctgtccctgcccctgtctctgccccttcctctgcccctgtctctgtctccatccctgcctccgtctctgcccctgtctctgtctctgtccctgcccctgtctctgcccctgtctctgcctctgcccctgcctctgcccctgtctctgtccctgcacCTGTAGCTTTCTCTGCCTCTGCCCCTgccactgtctctgcctctgtccctgcccctgccactgtctctgcctctgtctctgcctctgccactttctctgcctctgcctctgtccctgcccctgccccGGTCCCtgccactgtctctgtctctgtcgctgtctctgtccctgtctctgcccctgtctctgtctctgcccctgtctctatctctgccactgtctctgtctctgccactgtctctgcctctgcccctgtctctgccCCTGTTTCTGTCCCTgccactgtctctgcctctgcccctgtctctgtccctgcccctgtctctatctctgcccCTGTCGCTGTCTCTGCCCCTGTCgctgtctctgcccctgtctctgtctctgccactgtctctgtccctgcccctgtctctgtctttgtctctgcctCTGCCCCTGACACTGTCTCTGCCCCTGTCGCTGTCTCTACCCCTGTCgctgtctctgcccctgtctctgccactgtctctgtctctgcccctgtcgctgtctctgcccctgtctctgtctctgccgctgtctctatctctgccgctgtctccatctctgccgctgtctctgcctctgcccctgtctctgcctctgtctctgcccctgtctctgcccctgtctctgtctctgcccctgtctctgtctctgcccctgtctctgtctctgcccctgtctctgccactgtctctgtctctgcatctgtctctgcctctgcccctgcccctgtctctgcccctgcccctgtctctgcccctgccactgtctctgcccctgccactgtctctgcccctgtctctgccCTTGTCTCTGCCCTTgccactgtctctgcctctgcccctgtctctgcccctgccactgtctctgcctatgtctctgcctctgtccctgccactgtctctgcctctgcccctgcccctgcccctgtctCTGCCCCTGCCCCTGTCTATGCCCCTGCCAATgtctctgcccctgcctctgccCCTGCCACTGTCTTTGCCActgcctctacctctgtccctgtctctgtctctgcctctgcctctgtctctgcctctgtctctgccactgtctctgccactgtctctgcctctgccccTGCCACGGTCTCTGTTTCTGCCCCTgccactgtctctgcctctgcccctgtctctgcccctgtctctgtctctgccactgtctctgtctctgcccctgcctctgtctctgccactgtcactgcctctgcccctgtctctgtctctgcctctgcccctgcctctgtctctgccactgtcactgtcgctgtctctgtctctgcccctgtctctgtctctacccctgTCTCTGCCACTGCCACtgtctctgccactgtctctgcctctgcccctgccactgtctctgcccctgtctctgtctctgtctctgcccctgcctctgtctctgcccctgcctctgtctctgccccagtctctgtctctgccactgTCACTGCCACTGTCACTGCCactgcccctgtctctgtctctgcccctgtctctgtctctgtctctgcccctgtctctgcctctgcccctgtctctgccTATGTCTAtgcccctgcctctgtctctgcccctgtctctgccactgtctctgcctctgtctctgcctctgcccctgcctctgtctttgcccctgtctctgtctctgcccctgtctctgtctctgcctctgcccctgtctctgtctctgcccctgcctctgtctctgccactgtctctgcctctgcccctgtctctgtctctgcctctgcccctgcctctgtctctgccactgtctctgcctctgcctctgcccctgtctctgtctctgcctctgcccctgcctctgtctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611718 lncRNA upstream 27471 70454189 ~ 70454479 (+) True G540159
TU611716 lncRNA upstream 28540 70449362 ~ 70453410 (+) True G540158
TU611669 lncRNA upstream 136686 70345053 ~ 70345264 (+) True G540117
TU611662 lncRNA upstream 166103 70315619 ~ 70315847 (+) True G540110
TU611661 lncRNA upstream 168352 70313361 ~ 70313598 (+) True G540109
TU611740 lncRNA downstream 1371 70485739 ~ 70485972 (+) True G540180
TU611746 lncRNA downstream 11474 70495842 ~ 70496042 (+) True G540186
TU611747 lncRNA downstream 13027 70497395 ~ 70497604 (+) True G540187
TU611751 lncRNA downstream 22994 70507362 ~ 70507718 (+) True G540191
TU611767 lncRNA downstream 50120 70534488 ~ 70535213 (+) True G540201
XM_036980865.1 mRNA upstream 423887 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA upstream 423887 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA upstream 423887 70049150 ~ 70058063 (+) False LOC110526484
XM_021604994.2 mRNA upstream 443493 70036988 ~ 70038457 (+) False LOC110525047
XM_021607491.2 mRNA upstream 453021 70026162 ~ 70028929 (+) True emc8
XM_036980869.1 mRNA downstream 67395 70551763 ~ 70558098 (+) False LOC110526485
XM_021607495.2 mRNA downstream 110379 70594747 ~ 70599188 (+) False si:ch73-103b9.2
XM_021604952.2 mRNA downstream 131108 70615476 ~ 70621510 (+) False cmc2
XM_021604956.2 mRNA downstream 131108 70615476 ~ 70621510 (+) False cmc2
XM_021604954.2 mRNA downstream 131123 70615491 ~ 70621510 (+) False cmc2
TU611507 other upstream 442443 70036194 ~ 70039507 (+) True LOC110525047
TU611493 other upstream 462473 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 1114308 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 1469988 69011606 ~ 69011962 (+) True LOC110526955
TU610258 other upstream 1479122 68996083 ~ 69002828 (+) True G538877
TU611726 other downstream 67427 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 131157 70615525 ~ 70621474 (+) False cmc2
TU611817 other downstream 131157 70615525 ~ 70621474 (+) False cmc2
TU613619 other downstream 1315672 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 1617012 72101380 ~ 72102474 (+) True G542053

Expression Profile