RNA id: TU611747



Basic Information


Item Value
RNA id TU611747
length 210
lncRNA type intronic
GC content 0.39
exon number 1
gene id G540187
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70497395 ~ 70497604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTTTACACTTAATTCAGCTCGTGTCATGCAAATGTAGCTTTTTGCGACCCACGGAAACAACTGAAGACGGCGAACACAAAATGTAAAATCCTCAAAAGTTGTTATGAGAAAGCAGCACCGCTATGTCAACCGAGCTCGGTGCTTATTATCGGAAGTATTAGGTTGCGAAATCCAACTTTTTGTATAGaatgttaatgatacagtatgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU611746 lncRNA upstream 1353 70495842 ~ 70496042 (+) True G540186
TU611740 lncRNA upstream 11423 70485739 ~ 70485972 (+) True G540180
TU611718 lncRNA upstream 42916 70454189 ~ 70454479 (+) True G540159
TU611716 lncRNA upstream 43985 70449362 ~ 70453410 (+) True G540158
TU611669 lncRNA upstream 152131 70345053 ~ 70345264 (+) True G540117
TU611751 lncRNA downstream 9758 70507362 ~ 70507718 (+) True G540191
TU611767 lncRNA downstream 36884 70534488 ~ 70535213 (+) True G540201
TU611778 lncRNA downstream 56503 70554107 ~ 70574553 (+) True G540211
TU611788 lncRNA downstream 81016 70578620 ~ 70578901 (+) True G540221
TU611802 lncRNA downstream 96201 70593805 ~ 70594162 (+) True G540228
XM_036980865.1 mRNA upstream 439332 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA upstream 439332 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA upstream 439332 70049150 ~ 70058063 (+) False LOC110526484
XM_021604994.2 mRNA upstream 458938 70036988 ~ 70038457 (+) False LOC110525047
XM_021607491.2 mRNA upstream 468466 70026162 ~ 70028929 (+) True emc8
XM_036980869.1 mRNA downstream 54159 70551763 ~ 70558098 (+) False LOC110526485
XM_021607495.2 mRNA downstream 97143 70594747 ~ 70599188 (+) False si:ch73-103b9.2
XM_021604952.2 mRNA downstream 117872 70615476 ~ 70621510 (+) False cmc2
XM_021604956.2 mRNA downstream 117872 70615476 ~ 70621510 (+) False cmc2
XM_021604954.2 mRNA downstream 117887 70615491 ~ 70621510 (+) False cmc2
TU611739 other upstream 13027 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 457888 70036194 ~ 70039507 (+) True LOC110525047
TU611493 other upstream 477918 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 1129753 69361641 ~ 69367642 (+) True G539068
TU610304 other upstream 1485433 69011606 ~ 69011962 (+) True LOC110526955
TU611726 other downstream 54191 70551795 ~ 70553920 (+) True LOC110526485
TU611814 other downstream 117921 70615525 ~ 70621474 (+) False cmc2
TU611817 other downstream 117921 70615525 ~ 70621474 (+) False cmc2
TU613619 other downstream 1302436 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 1603776 72101380 ~ 72102474 (+) True G542053

Expression Profile