RNA id: TU611788


Basic Information

Item Value
RNA id TU611788
length 282
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G540221
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70578620 ~ 70578901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacacacagtatagagagagtacattttcatggagaacaaaggaaatccttccacctcacagaacttgaggtacgaacaaatgtcatgttccggagaaagtataaaagaacggtgaagaatccagctaggAACTGGTCcttttgtcacaacttggggaagctcatgggagatggtgtggccacattaccataacgctgtttatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgtcacatttcaggcttcaaacataaagatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611778 lncRNA upstream 4067 70554107 ~ 70574553 (+) True G540211
TU611767 lncRNA upstream 43407 70534488 ~ 70535213 (+) True G540201
TU611751 lncRNA upstream 70902 70507362 ~ 70507718 (+) True G540191
TU611747 lncRNA upstream 81016 70497395 ~ 70497604 (+) True G540187
TU611746 lncRNA upstream 82578 70495842 ~ 70496042 (+) True G540186
TU611802 lncRNA downstream 14904 70593805 ~ 70594162 (+) True G540228
TU611804 lncRNA downstream 16650 70595551 ~ 70596187 (+) False si:ch73-103b9.2
TU611803 lncRNA downstream 18951 70597852 ~ 70598811 (+) True si:ch73-103b9.2
TU611805 lncRNA downstream 24494 70603395 ~ 70603644 (+) True G540231
TU611807 lncRNA downstream 26741 70605642 ~ 70605879 (+) True G540233
XM_036980869.1 mRNA upstream 20522 70551763 ~ 70558098 (+) False LOC110526485
XM_036980865.1 mRNA upstream 520557 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA upstream 520557 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA upstream 520557 70049150 ~ 70058063 (+) False LOC110526484
XM_021604994.2 mRNA upstream 540163 70036988 ~ 70038457 (+) False LOC110525047
XM_021607495.2 mRNA downstream 15846 70594747 ~ 70599188 (+) False si:ch73-103b9.2
XM_021604952.2 mRNA downstream 36575 70615476 ~ 70621510 (+) False cmc2
XM_021604956.2 mRNA downstream 36575 70615476 ~ 70621510 (+) False cmc2
XM_021604954.2 mRNA downstream 36590 70615491 ~ 70621510 (+) False cmc2
XM_021604957.2 mRNA downstream 36591 70615492 ~ 70621510 (+) False cmc2
TU611726 other upstream 24700 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 94252 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 539113 70036194 ~ 70039507 (+) True LOC110525047
TU611493 other upstream 559143 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 1210978 69361641 ~ 69367642 (+) True G539068
TU611814 other downstream 36624 70615525 ~ 70621474 (+) False cmc2
TU611817 other downstream 36624 70615525 ~ 70621474 (+) False cmc2
TU613619 other downstream 1221139 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 1522479 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 1572119 72151020 ~ 72152394 (+) True G542100

Expression Profile