RNA id: TU611805


Basic Information

Item Value
RNA id TU611805
length 250
lncRNA type intronic
GC content 0.37
exon number 1
gene id G540231
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70603395 ~ 70603644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCACAATGCATGTCTCAATCTGTCCATCTGGCTTGTAAAAATCCTTTGTTTCAGTGTCTATTTGTCGACTTGTCTGTACCTTCAACCTTGGTTCAGTAGCTAGACAAGCATTTTTGAGTTAACTACACAAACAGGCAGTAGATTCAAGTAGGGAAGCACGATTATTTAATATCCTATATTCCTCCTGGGTGGATATTACTGTAAATTCTATTTTAGGGAGATTCATGTAGCATAAAATCATCATTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611803 lncRNA upstream 4584 70597852 ~ 70598811 (+) True si:ch73-103b9.2
TU611804 lncRNA upstream 7208 70595551 ~ 70596187 (+) False si:ch73-103b9.2
TU611802 lncRNA upstream 9233 70593805 ~ 70594162 (+) True G540228
TU611788 lncRNA upstream 24494 70578620 ~ 70578901 (+) True G540221
TU611778 lncRNA upstream 28842 70554107 ~ 70574553 (+) True G540211
TU611807 lncRNA downstream 1998 70605642 ~ 70605879 (+) True G540233
TU611811 lncRNA downstream 4711 70608355 ~ 70608611 (+) True G540237
TU611812 lncRNA downstream 11881 70615525 ~ 70621474 (+) False cmc2
TU611813 lncRNA downstream 11881 70615525 ~ 70621474 (+) False cmc2
TU611815 lncRNA downstream 11881 70615525 ~ 70621474 (+) False cmc2
XM_021607495.2 mRNA upstream 4207 70594747 ~ 70599188 (+) False si:ch73-103b9.2
XM_036980869.1 mRNA upstream 45297 70551763 ~ 70558098 (+) False LOC110526485
XM_036980865.1 mRNA upstream 545332 70049150 ~ 70058063 (+) False LOC110526484
XM_036980866.1 mRNA upstream 545332 70049150 ~ 70058063 (+) False LOC110526484
XM_036980867.1 mRNA upstream 545332 70049150 ~ 70058063 (+) False LOC110526484
XM_021604952.2 mRNA downstream 11832 70615476 ~ 70621510 (+) False cmc2
XM_021604956.2 mRNA downstream 11832 70615476 ~ 70621510 (+) False cmc2
XM_021604954.2 mRNA downstream 11847 70615491 ~ 70621510 (+) False cmc2
XM_021604957.2 mRNA downstream 11848 70615492 ~ 70621510 (+) False cmc2
NM_001160541.1 mRNA downstream 11875 70615519 ~ 70621506 (+) False cmc2
TU611726 other upstream 49475 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 119027 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 563888 70036194 ~ 70039507 (+) True LOC110525047
TU611493 other upstream 583918 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 1235753 69361641 ~ 69367642 (+) True G539068
TU611814 other downstream 11881 70615525 ~ 70621474 (+) False cmc2
TU611817 other downstream 11881 70615525 ~ 70621474 (+) False cmc2
TU613619 other downstream 1196396 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 1497736 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 1547376 72151020 ~ 72152394 (+) True G542100

Expression Profile