RNA id: TU611811


Basic Information

Item Value
RNA id TU611811
length 257
lncRNA type intronic
GC content 0.44
exon number 1
gene id G540237
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70608355 ~ 70608611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagtggtgggtggtataaggtgctttagtaacaaaagtgatggcactgtgataaactgcatccagtttgctgagtagagtattggaagctattttgtagatgacatcgccgaagtcgaggatcggtaggatagtcagttttactagggtaggtttggcggcgtgagtgaaggaggctttgttgcggaatagaaaaccgactctagatttgaatttagattggagatgtttgatatgagtctggaaggagagtttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU611807 lncRNA upstream 2476 70605642 ~ 70605879 (+) True G540233
TU611805 lncRNA upstream 4711 70603395 ~ 70603644 (+) True G540231
TU611803 lncRNA upstream 9544 70597852 ~ 70598811 (+) True si:ch73-103b9.2
TU611804 lncRNA upstream 12168 70595551 ~ 70596187 (+) False si:ch73-103b9.2
TU611802 lncRNA upstream 14193 70593805 ~ 70594162 (+) True G540228
TU611812 lncRNA downstream 6914 70615525 ~ 70621474 (+) False cmc2
TU611813 lncRNA downstream 6914 70615525 ~ 70621474 (+) False cmc2
TU611815 lncRNA downstream 6914 70615525 ~ 70621474 (+) False cmc2
TU611816 lncRNA downstream 6914 70615525 ~ 70621474 (+) False cmc2
TU611818 lncRNA downstream 6914 70615525 ~ 70621474 (+) True cmc2
XM_021607495.2 mRNA upstream 9167 70594747 ~ 70599188 (+) False si:ch73-103b9.2
XM_036980869.1 mRNA upstream 50257 70551763 ~ 70558098 (+) False LOC110526485
XM_036980865.1 mRNA upstream 550292 70049150 ~ 70058063 (+) False LOC110526484
XM_021604952.2 mRNA downstream 6865 70615476 ~ 70621510 (+) False cmc2
XM_021604956.2 mRNA downstream 6865 70615476 ~ 70621510 (+) False cmc2
XM_021604954.2 mRNA downstream 6880 70615491 ~ 70621510 (+) False cmc2
XM_021604957.2 mRNA downstream 6881 70615492 ~ 70621510 (+) False cmc2
NM_001160541.1 mRNA downstream 6908 70615519 ~ 70621506 (+) False cmc2
TU611726 other upstream 54435 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 123987 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 568848 70036194 ~ 70039507 (+) True LOC110525047
TU611493 other upstream 588878 70016342 ~ 70019477 (+) True G539959
TU610498 other upstream 1240713 69361641 ~ 69367642 (+) True G539068
TU611814 other downstream 6914 70615525 ~ 70621474 (+) False cmc2
TU611817 other downstream 6914 70615525 ~ 70621474 (+) False cmc2
TU613619 other downstream 1191429 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 1492769 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 1542409 72151020 ~ 72152394 (+) True G542100

Expression Profile