RNA id: TCONS_00032845


Basic Information

Item Value
RNA id TCONS_00032845
length 3663
RNA type mRNA
GC content 0.53
exon number 17
gene id XLOC_016744
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42605252 ~ 42705284 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGAAGAAGCTCGAAGATTAGAAGAAAAACTAAAAAGCAAACAGACTCAAGTTGTCTTCCCTGAAACCATCACACCAGACAGTATTACAGCAGAGGATAGTCCACAAAAAAGCATCCCGCACGAGAGCCCCATTGAAGAAACATCGCTAGCAGAACAGGTGTCTGACGAAGTGTTCGAAGCAGAAACAAACCAAGCATCGCAGGTGGAGGAAATCCTGCGTCTGGAGCGTGAGATTGAAGGTCTGCGACGCCAGAAAGAGGCCCAGGAGCAGAGTCTGACCACACAGTCGCTGCATCGTCTGCAACGGCTGCGCGATCAGGAGCTGCGCAGGCTGGAGGAAGAGGCCTGTAAAGCAGCGCAGCAGTTCCTCACCTCGCTCAACTTCGACGAAATCGACGAGTGCGTTCGCAACATCGAGAGCTCGCTCGGGGGATCTGGAGGATCACAGCAGGGCTCCCCTAGAGGGGAAGAAGATGAAGTGGATGAAGGTCTGGGAGTGGACGAAGATGGGTTTAAAGATTCTCCAAACCCCAGTGAACATGGTCACTCTGATGGACAGCGAACCAGCGGTATAAGAACCAGCGACGATTCATCAGAAGAGGATCCTTATGCTAATGACCGCGTGGCCCTGCCCCCAGTCCTGCCCCTTATTATGCCCTCAGTTTATCGTGCTCCGCCCTCCAGCAGTGGCTCCACCTATTCTCATGCTGTTCTGGAGGAGGAGACGGAGCTTATCCCTCCCGATGAGGACTCGGATTATGATGCGGACGATTATGATGAAGGAGGTCTGATCATGCGGCCGCCCAGTCTCCCGCCTCATAATGACATCTGGTCACGCGAGAACCGCAGCTCGTTGGCAACAAGTGCCAGTGTGAGTTCAGGCGCGTATCGATTCAGCTCAGATGGCCCACAGTCCTCGtttgAGGACAGTGAAGATGACTTTGACAGGTTTGACACTGATGATGAATCGTCTTACCGGAGGGACTCAGTCTACAGCTGTGTTACTCTCCCATACTTCCacagtttcctttatattaaagGTGGCTTGTTGAACTCATGGAAGCGTCGTTGGTGTGTGCTGAAGGATGAGACATTTCTGTGGTTCAGGAGCCGACAGGAGGCTCTGAAACAGGGCTGGCTGATGAAGAAGGGCGGAggctcctccacactgtcccgccGCAACTGGAGGCGCCGCTGGTTCGTTCTGAGACAGAGCAAACTCATTTACTACGAGAATGACACCGAGGAGAGGATGAAAGGCATGCTGGACATGCACGAAGCTAAAGAGATTATTGATGTGACCGGGAAGGAGAATGGGATTGATATTGTTATGCCAGGCAGAACGTATCACCTTGTAGCAGAAACGGCAGAGGATTCCAGTCATTGGTTCAGCGTGTTGAGTCAGGTGCACATGTCAACAGAACAGGAGATTCGAGAGATGCACGATGAACAAGCTAATCCTCAGAATGCTGTGggAACTTTGGATGTAGGAATGATTGATTCTGTATGTGCCTCTGACAACCCAGAAAgGCCGAATGCCTTTGTTATAATCACAGCCCATCGTGTGCTGCATTGCATGGCTGAATCAGCTGAAGAAATGCATCACTGGATCACGCTGCTCCAGCGAACGAAAGGAGACACGCGTGTGCAGGGACAAGAGTTCATCATCAGGGGATGGCTATATAAAGAGATCCGAGGCAGCAGTCAAGCGAATCTGAAGCTGAAGAAGCGCTGGTTTGTGCTGACTCACAATTCTGTGGACTATTATAAAAGCTCGGAGAGAAACGCTCTGAAACTGGGCTCTTTAGTGCTGAACAGCCTTTGCTCTGTGCTCGTTCCTGATGAGAGAGTCTTCAGAGAGACCGGGTACTGGAACGTGAGTGTGTTTGGCCATAAGCATTCATACAGGCTGTACTCCAAGCTGCAGACGGAGGCTAGTCGATGGGCCAACGCTGTGCAGACCGTCATCGACAGCAAACCGCTCATCGACACAAACACGCAGCGGCTTATACTGGACATCAAGGAGAACTGCCTGAATTCAGAGGTGGTGGAACAAATCTACAAGAGGAATCCAATACTGCGGTACACACACCACCCTCTGCACACAGCACTCCTACCTTTACCCTATGGAGATGCACAACAAAGCTCTGACAAAGGTAGAAGTTATGGCACCCTGCAGGCTGAAGCCCTGAAGCTCTTCAATGTCCTCCATCAGCTGGAGACAGAGGTCAGTGCCATCCCTCACATCCAGACACTCCTGCAGACGACGCACGACCTGCGGCCTCTGAGAGACGAGCTCTTTTGCCAGCTCATCAAGCAGACCTCACACCACCCCAAACCTGGAGGCCCCGCCCACATCAACAGCTGGCGAATCATAGCCTGCCTGTGCTGCACCTTCAGCCCCGCCTCCAGAAGCATCCTCAAATACCTCAAGTTTCACTTTAAGAGGACACGAGAGCTGTACCCAGGCACAGAGATGGAGCGCTATGCTGCATTTTCCCAGGATGCCTTGCGACACGTGCGTGGACGAGAGTATGTTCCTTCACAGGAGGAGCTGAGGGCCATCCTAAGCAGACAGGAAATGACAGCGACCGTTTACTGCCACGGTGGAGGATCCTGCAAAATCACCATCAACTCGCACACAACTGCCGGAGagGTGGTGGAGAAGCTGCTGAAGGGTCTGTCTATGGAGGACTGCAGGAACATGTTTGCTTTGTTTGAACACAACGACAACACAGACAGAGCCATAGAGAGCAGGACTGTGGTGGCCGACATCCTCGCCAAGTTTGAGAAGTTGGCCAATAAAGAGCAGGACGGAGAGAGCTGGAAGTTTTATTTCAAGCTGTTCTGTTTCTCTGAACCTGAGAATGTACCTGCTgacagtgtggagtttgcattcatGTTCGAGCAGGCCCATGAAGCAGTCATCAGAGGTCGGTATCCTGCCCCAGAAGAGACTCTGCAGTTTCTGGCAGCCCTGCGTCTGCAGTATCTGCTGGGAGATTACAGTACCCAGAGTGCCCTGCCGGAGCTGGATCAGGTTTTCCCCATGGAGCGACTGCGAGCGCGGGTACAGCAGTCGGCACGGAGCTTCGCCTCTGCCACACCGTCCACCGACAGAAAGAGGAGCAGTTTTCTGGAGGGCACACTGAGGCGGAGCTTCCGCGGGACACTGGGGCGACAGCGCCAAGAGGAGGAGCCTGCAGCCATAGAGGTGTGGCTACAAGATGAGAAGGCGGGGCTAAAGAGTTGTTTGGTGGAGAAGTGGCGTAAACTGCAGGGGATGGAGCAAGATCAAGCCATGAAAAAATACATGGGTCTTATTAAGGAGTGGCAGGGGTATGGATCCACACTGTTTGATGTGGAGTGTGTAGATGGTGTGTATCCTGGTGAGCTGTGGTTGGGTGTCAGTcgtaagggtgtgtgtgtgtacaagcgCGGGGAGCCATGGCCTCTCGAGGTGTTTCTCTATGAGGTCATACTGTCCTTCGGTGCGCCTCAACCAAATGTCTACAAGATCAGCGTGGAAGGACGAGAGCTGCTCTTCAACACAAGCATGGTGGTGGACATCGCAAAGCTGATGAAGGCGTACATCAGTCTCATAGTGAAGAAACGTTTCAGCACTTGTCAATCCATCAGCAGCCATGGCAGTAACTGGTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016459 myosin complex cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis
ko05130 Pathogenic Escherichia coli infection
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-070912-277 Predicted to enable ATP binding activity; actin binding activity; and cytoskeletal motor activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of myosin complex. Is expressed in midbrain hindbrain boundary; otic vesicle; and rhombomere. Orthologous to human MYO10 (myosin X).

Ensembl:

ensembl_id ENSDART00000179866

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033916 lncRNA downstream 7799 42596228 ~ 42597593 (-) True XLOC_016743
TCONS_00033915 lncRNA downstream 8862 42595924 ~ 42596530 (-) False XLOC_016743
TCONS_00033914 lncRNA downstream 574406 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00032816 lncRNA downstream 574406 42029551 ~ 42030986 (-) False XLOC_016728
TCONS_00032815 lncRNA downstream 575137 42027457 ~ 42030255 (-) False XLOC_016728
TCONS_00033917 lncRNA upstream 531 42628559 ~ 42628918 (-) False XLOC_016744
TCONS_00033918 lncRNA upstream 37874 42665902 ~ 42748662 (-) True XLOC_016745
TCONS_00033395 lncRNA upstream 49995 42678023 ~ 42678382 (-) True XLOC_016746
TCONS_00033919 lncRNA upstream 80641 42708669 ~ 42710429 (-) True XLOC_016747
TCONS_00033920 lncRNA upstream 85771 42713799 ~ 42717726 (-) True XLOC_016748
TCONS_00032843 mRNA downstream 46843 42496523 ~ 42558549 (-) True XLOC_016742
TCONS_00032842 mRNA downstream 52726 42496498 ~ 42552666 (-) False XLOC_016742
TCONS_00032840 mRNA downstream 113191 42422390 ~ 42492201 (-) False XLOC_016741
TCONS_00032847 mRNA upstream 26712 42654740 ~ 42705284 (-) False XLOC_016744
TCONS_00032849 mRNA upstream 148196 42776224 ~ 42864472 (-) False XLOC_016750
TCONS_00032850 mRNA upstream 148196 42776224 ~ 42871286 (-) False XLOC_016750
TCONS_00032851 mRNA upstream 186914 42814942 ~ 42827336 (-) False XLOC_016750
TCONS_00032852 mRNA upstream 187199 42815227 ~ 42843797 (-) True XLOC_016750
TCONS_00032837 other downstream 189604 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 230283 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 658496 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032808 other downstream 985280 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032800 other downstream 1183670 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032848 other upstream 44822 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032856 other upstream 334200 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032894 other upstream 1564771 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1894828 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 2130021 44758049 ~ 44760347 (-) True XLOC_016790

Expression Profile

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