RNA id: TU611831



Basic Information


Item Value
RNA id TU611831
length 278
lncRNA type intronic
GC content 0.36
exon number 1
gene id G540249
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70628841 ~ 70629118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aagcaacacagatacccgccatgttatggagtcaacaaaagtcagaaatagcattataaatattcacttacctttgatgatcttcatcagaatgcactcccaggaatcccagttccacaataaatgttagttttgtttgataaagtccatcatttatgtccaaatacctcctttttgtttgcgcattTAGTACAGTAATCCAAATGTGCAAGCACTAGGTCCAGACAAAGTCAAAaaggttatattacagttcgtagaaacatgtcaaacgatgtata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU611819 lncRNA upstream 1699 70623833 ~ 70627142 (+) True G540239
TU611812 lncRNA upstream 7367 70615525 ~ 70621474 (+) False cmc2
TU611833 lncRNA downstream 3214 70632332 ~ 70632799 (+) True G540251
TU612356 lncRNA downstream 68376 70697494 ~ 70697738 (+) True G540714
TU612387 lncRNA downstream 95874 70724992 ~ 70725227 (+) True G540745
TU612414 lncRNA downstream 116061 70745179 ~ 70745382 (+) True G540771
TU612422 lncRNA downstream 125278 70754396 ~ 70754614 (+) True G540779
XM_021604956.2 mRNA upstream 7331 70615476 ~ 70621510 (+) False cmc2
XM_021607510.2 mRNA downstream 1052483 71681601 ~ 71690360 (+) True LOC110526495
XR_005052233.1 mRNA downstream 1332806 71961924 ~ 71967802 (+) False LOC118964930
XM_021607530.2 mRNA downstream 1381977 72011095 ~ 72021875 (+) True LOC110526507
XM_021607535.2 mRNA downstream 1445032 72074150 ~ 72098245 (+) True LOC110526509
XM_021607537.2 mRNA downstream 1488620 72117738 ~ 72135463 (+) False LOC110526510
TU611814 other upstream 7367 70615525 ~ 70621474 (+) False cmc2
TU611817 other upstream 7367 70615525 ~ 70621474 (+) False cmc2
TU611726 other upstream 74921 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 144473 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 589334 70036194 ~ 70039507 (+) True LOC110525047
TU613619 other downstream 1170922 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 1472262 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 1521902 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 2036342 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 2136563 72765681 ~ 72766851 (+) True G542890

Expression Profile