RNA id: TU613135



Basic Information


Item Value
RNA id TU613135
length 203
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G541458
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71331713 ~ 71331915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttttgaatggtaataTAAAGATAAGgttgagcgatggccgagcggcacaggcaagatgcaatggatggtataagatacagtacatacatatgagatgagtaatgtaagacatgtaaacattattaaagtggcattgtttaaagtgactagtgatccatttattaaagtggccaatgatttgaggCAGCAGCCTCAGaattag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU612535 lncRNA upstream 475610 70855876 ~ 70856103 (+) True G540885
TU612533 lncRNA upstream 476597 70854802 ~ 70855116 (+) True G540883
TU612422 lncRNA upstream 577099 70754396 ~ 70754614 (+) True G540779
TU612414 lncRNA upstream 586331 70745179 ~ 70745382 (+) True G540771
TU612387 lncRNA upstream 606486 70724992 ~ 70725227 (+) True G540745
TU613207 lncRNA downstream 60819 71392734 ~ 71392969 (+) True G541528
TU613223 lncRNA downstream 72125 71404040 ~ 71404289 (+) True G541544
TU613225 lncRNA downstream 73055 71404970 ~ 71405213 (+) True G541546
TU613226 lncRNA downstream 74209 71406124 ~ 71406339 (+) True G541547
TU613424 lncRNA downstream 227663 71559578 ~ 71559855 (+) True G541731
XM_021604956.2 mRNA upstream 710203 70615476 ~ 70621510 (+) False cmc2
XM_021607510.2 mRNA downstream 349686 71681601 ~ 71690360 (+) True LOC110526495
XR_005052233.1 mRNA downstream 630009 71961924 ~ 71967802 (+) False LOC118964930
XM_021607530.2 mRNA downstream 679180 72011095 ~ 72021875 (+) True LOC110526507
XM_021607535.2 mRNA downstream 742235 72074150 ~ 72098245 (+) True LOC110526509
XM_021607537.2 mRNA downstream 785823 72117738 ~ 72135463 (+) False LOC110526510
TU611814 other upstream 710239 70615525 ~ 70621474 (+) False cmc2
TU611817 other upstream 710239 70615525 ~ 70621474 (+) False cmc2
TU611726 other upstream 777793 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 847345 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 1292206 70036194 ~ 70039507 (+) True LOC110525047
TU613619 other downstream 468125 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 769465 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 819105 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 1333545 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 1433766 72765681 ~ 72766851 (+) True G542890

Expression Profile