RNA id: TU613225



Basic Information


Item Value
RNA id TU613225
length 244
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G541546
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71404970 ~ 71405213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcgcagaccagctggccggtgtgtttacggacatattcaatcaatccctataccagtctgctgttcccacatgcttcaagagggccaccattgttcctgttcccaagaatgctaaggtaactgagctaaacgactaccgccccgtagcactcacttccgtcatcatgaagtgctttgagagactagtcaaggaccatatcacctccaccctacccgacaccctagacccactccaatttgctta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU613223 lncRNA upstream 681 71404040 ~ 71404289 (+) True G541544
TU613207 lncRNA upstream 12001 71392734 ~ 71392969 (+) True G541528
TU613135 lncRNA upstream 73055 71331713 ~ 71331915 (+) True G541458
TU612535 lncRNA upstream 548867 70855876 ~ 70856103 (+) True G540885
TU612533 lncRNA upstream 549854 70854802 ~ 70855116 (+) True G540883
TU613226 lncRNA downstream 911 71406124 ~ 71406339 (+) True G541547
TU613424 lncRNA downstream 154365 71559578 ~ 71559855 (+) True G541731
TU613434 lncRNA downstream 160299 71565512 ~ 71565720 (+) True G541741
TU613447 lncRNA downstream 173041 71578254 ~ 71578500 (+) True G541754
TU613459 lncRNA downstream 181889 71587102 ~ 71587523 (+) True G541766
XM_021604956.2 mRNA upstream 783460 70615476 ~ 70621510 (+) False cmc2
XM_021607510.2 mRNA downstream 276388 71681601 ~ 71690360 (+) True LOC110526495
XR_005052233.1 mRNA downstream 556711 71961924 ~ 71967802 (+) False LOC118964930
XM_021607530.2 mRNA downstream 605882 72011095 ~ 72021875 (+) True LOC110526507
XM_021607535.2 mRNA downstream 668937 72074150 ~ 72098245 (+) True LOC110526509
XM_021607537.2 mRNA downstream 712525 72117738 ~ 72135463 (+) False LOC110526510
TU611814 other upstream 783496 70615525 ~ 70621474 (+) False cmc2
TU611817 other upstream 783496 70615525 ~ 70621474 (+) False cmc2
TU611726 other upstream 851050 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 920602 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 1365463 70036194 ~ 70039507 (+) True LOC110525047
TU613619 other downstream 394827 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 696167 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 745807 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 1260247 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 1360468 72765681 ~ 72766851 (+) True G542890

Expression Profile