RNA id: TU613424



Basic Information


Item Value
RNA id TU613424
length 278
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G541731
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71559578 ~ 71559855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggttcgcacccaggctctgttgcagccggccgcgaccgggaggtccatggggcgacgcacaattggcctagcgtcgtccgggttagggaggatttggccagtagggatatccttgtctcattgtgcactagcgactcctgtggcgggcagggcgcagtgcgcgctaaccaggtcgccaggtgcacagtgtttcctccgacacattggtgcggctggcttccgggttggatgcgctctgtgttaagaagcagtgcggcttggttgggttgtgtttcgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU613226 lncRNA upstream 153239 71406124 ~ 71406339 (+) True G541547
TU613225 lncRNA upstream 154365 71404970 ~ 71405213 (+) True G541546
TU613223 lncRNA upstream 155289 71404040 ~ 71404289 (+) True G541544
TU613207 lncRNA upstream 166609 71392734 ~ 71392969 (+) True G541528
TU613135 lncRNA upstream 227663 71331713 ~ 71331915 (+) True G541458
TU613434 lncRNA downstream 5657 71565512 ~ 71565720 (+) True G541741
TU613447 lncRNA downstream 18399 71578254 ~ 71578500 (+) True G541754
TU613459 lncRNA downstream 27247 71587102 ~ 71587523 (+) True G541766
TU613479 lncRNA downstream 41572 71601427 ~ 71601719 (+) True G541785
TU613482 lncRNA downstream 44440 71604295 ~ 71604827 (+) True G541788
XM_021604956.2 mRNA upstream 938068 70615476 ~ 70621510 (+) False cmc2
XM_021607510.2 mRNA downstream 121746 71681601 ~ 71690360 (+) True LOC110526495
XR_005052233.1 mRNA downstream 402069 71961924 ~ 71967802 (+) False LOC118964930
XM_021607530.2 mRNA downstream 451240 72011095 ~ 72021875 (+) True LOC110526507
XM_021607535.2 mRNA downstream 514295 72074150 ~ 72098245 (+) True LOC110526509
XM_021607537.2 mRNA downstream 557883 72117738 ~ 72135463 (+) False LOC110526510
TU611814 other upstream 938104 70615525 ~ 70621474 (+) False cmc2
TU611817 other upstream 938104 70615525 ~ 70621474 (+) False cmc2
TU611726 other upstream 1005658 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 1075210 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 1520071 70036194 ~ 70039507 (+) True LOC110525047
TU613619 other downstream 240185 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 541525 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 591165 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 1105605 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 1205826 72765681 ~ 72766851 (+) True G542890

Expression Profile