RNA id: TU613459



Basic Information


Item Value
RNA id TU613459
length 422
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G541766
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71587102 ~ 71587523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcttaccaggctggggagacatgctggaggcctggtacgtggaatcggaacaggtctcaccggactggggagatgcactggaagcctggtgcgtggagcaggcaccggatacactgggccgtggaggcacactggaggtctAAAGCGTAGAGCTGGCATCCAGCCATCCTGGACGGGCCCGTCTAGCCCGtccaaaaacaagacaagacaaaaacaagacaagacaaaaacaagacaagtcaaaaacaagacaagacaagacaagacaaaaacactgTGCActtcacggcataacacggtccctgaccagtaccacgctccCTACCGTGAGCACGGGGAGTTAGCTCCGCCAGCCTCCCCGTGTGACCCCAAATTGTTTGGGGGGGGAGTGGCTTCCCAGTCTTCCTTGCCAGCCTTGACCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU613447 lncRNA upstream 8602 71578254 ~ 71578500 (+) True G541754
TU613434 lncRNA upstream 21382 71565512 ~ 71565720 (+) True G541741
TU613424 lncRNA upstream 27247 71559578 ~ 71559855 (+) True G541731
TU613226 lncRNA upstream 180763 71406124 ~ 71406339 (+) True G541547
TU613225 lncRNA upstream 181889 71404970 ~ 71405213 (+) True G541546
TU613479 lncRNA downstream 13904 71601427 ~ 71601719 (+) True G541785
TU613482 lncRNA downstream 16772 71604295 ~ 71604827 (+) True G541788
TU613488 lncRNA downstream 21824 71609347 ~ 71613696 (+) False G541794
TU613490 lncRNA downstream 21824 71609347 ~ 71610133 (+) False G541794
TU613491 lncRNA downstream 21824 71609347 ~ 71610722 (+) False G541794
XM_021604956.2 mRNA upstream 965592 70615476 ~ 70621510 (+) False cmc2
XM_021607510.2 mRNA downstream 94078 71681601 ~ 71690360 (+) True LOC110526495
XR_005052233.1 mRNA downstream 374401 71961924 ~ 71967802 (+) False LOC118964930
XM_021607530.2 mRNA downstream 423572 72011095 ~ 72021875 (+) True LOC110526507
XM_021607535.2 mRNA downstream 486627 72074150 ~ 72098245 (+) True LOC110526509
XM_021607537.2 mRNA downstream 530215 72117738 ~ 72135463 (+) False LOC110526510
TU611814 other upstream 965628 70615525 ~ 70621474 (+) False cmc2
TU611817 other upstream 965628 70615525 ~ 70621474 (+) False cmc2
TU611726 other upstream 1033182 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 1102734 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 1547595 70036194 ~ 70039507 (+) True LOC110525047
TU613619 other downstream 212517 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 513857 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 563497 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 1077937 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 1178158 72765681 ~ 72766851 (+) True G542890

Expression Profile