RNA id: TCONS_00032848


Basic Information

Item Value
RNA id TCONS_00032848
length 530
RNA type nonsense_mediated_decay
GC content 0.49
exon number 3
gene id XLOC_016744
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42605252 ~ 42705284 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCTGTGACACTTATGGTTCGGCTCGTGGACTCCTATGAAGACCGTGGAGACTCGTCATTATAAGGACAATGGATAACTTTTTCACCGAGgGTTGTCGTGTGTGGCTCTGGGTGGAGGATCATTATGTCCCCAGTACGGTGGACTCGTGCTCGGGCGGAGTGGTGGTCTTTAACACAGACTACGGTCAGGTGTACACCTACAAACAGAACGCCGTGAGCAGACAGAGGGTTTACCCAATGCACAGCAGCAGCATCACCAGCGTGGAGGACATGGCAGCCCTACAGGATCTGCATGACGGGGCCATTCTTCACAATCTGCACCTCCGCTACACACAGAAGGCCATATATGTGAGTGAACACAccgcaaaaaacacacacacacattcaatatAGTGTTGTTTATTCATCACTGAGCATTTATTAATGAGTGTGCGCGCCCTAGTGTGAATGTTCAAACATGTAGTCGTCAAGGATACACGGTTGTCGTGCAGGTGGCTGGACCACTTTCAGTGCTTTTAATTTGTCAAGT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016459 myosin complex cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis
ko05130 Pathogenic Escherichia coli infection
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-070912-277 Predicted to enable ATP binding activity; actin binding activity; and cytoskeletal motor activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of myosin complex. Is expressed in midbrain hindbrain boundary; otic vesicle; and rhombomere. Orthologous to human MYO10 (myosin X).

Ensembl:

ensembl_id ENSDART00000139515

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033917 lncRNA downstream 43932 42628559 ~ 42628918 (-) False XLOC_016744
TCONS_00032846 lncRNA downstream 60443 42609381 ~ 42612407 (-) False XLOC_016744
TCONS_00033916 lncRNA downstream 75257 42596228 ~ 42597593 (-) True XLOC_016743
TCONS_00033915 lncRNA downstream 76320 42595924 ~ 42596530 (-) False XLOC_016743
TCONS_00033914 lncRNA downstream 641864 42027457 ~ 42030986 (-) False XLOC_016728
TCONS_00033919 lncRNA upstream 3736 42708669 ~ 42710429 (-) True XLOC_016747
TCONS_00033920 lncRNA upstream 8866 42713799 ~ 42717726 (-) True XLOC_016748
TCONS_00033921 lncRNA upstream 14104 42719037 ~ 42771871 (-) False XLOC_016749
TCONS_00033922 lncRNA upstream 51958 42756891 ~ 42771978 (-) False XLOC_016749
TCONS_00033396 lncRNA upstream 54620 42759553 ~ 42764475 (-) True XLOC_016749
TCONS_00032845 mRNA downstream 44822 42605392 ~ 42628028 (-) False XLOC_016744
TCONS_00032843 mRNA downstream 114301 42496523 ~ 42558549 (-) True XLOC_016742
TCONS_00032842 mRNA downstream 120184 42496498 ~ 42552666 (-) False XLOC_016742
TCONS_00032838 mRNA downstream 180405 42419841 ~ 42492445 (-) False XLOC_016741
TCONS_00032840 mRNA downstream 180649 42422390 ~ 42492201 (-) False XLOC_016741
TCONS_00032849 mRNA upstream 71291 42776224 ~ 42864472 (-) False XLOC_016750
TCONS_00032850 mRNA upstream 71291 42776224 ~ 42871286 (-) False XLOC_016750
TCONS_00032851 mRNA upstream 110009 42814942 ~ 42827336 (-) False XLOC_016750
TCONS_00032852 mRNA upstream 110294 42815227 ~ 42843797 (-) True XLOC_016750
TCONS_00032853 mRNA upstream 237619 42942552 ~ 42960353 (-) False XLOC_016752
TCONS_00032837 other downstream 257062 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 297741 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 725954 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032808 other downstream 1052738 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032800 other downstream 1251128 41421606 ~ 41421722 (-) True XLOC_016717
TCONS_00032856 other upstream 257295 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032894 other upstream 1487866 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1817923 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 2053116 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 2058149 44763082 ~ 44763375 (-) True XLOC_016791

Expression Profile

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