RNA id: TU613488



Basic Information


Item Value
RNA id TU613488
length 765
lncRNA type inter_gene
GC content 0.31
exon number 4
gene id G541794
representative False

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71609347 ~ 71613696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcatgaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacatcagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacatcaacataaaaaacaccagcataaaaaacaccagaataaaacatcagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagaataaaacatcagcataaaaaacaccagcataaaaaacaccagcataaaaaacatcagcataaaaaacaacagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccatcataaaaaacaccagaataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaagaCACCAGCATAAAagacaccagcataaaaaacaccagaataaaacatcagcataaaaaacaccagcataaaaaacaccagaataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacaacagaataaaaaacaccagcataaaaaacaccagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagaataaaacatcagcataaaaaacatcagcataaaaaacaccagaataaaaacaccagcataaaaaacaccagcataaaacaccagcataaaaaacaccagaataaaaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU613482 lncRNA upstream 4520 71604295 ~ 71604827 (+) True G541788
TU613479 lncRNA upstream 7628 71601427 ~ 71601719 (+) True G541785
TU613459 lncRNA upstream 21824 71587102 ~ 71587523 (+) True G541766
TU613447 lncRNA upstream 30847 71578254 ~ 71578500 (+) True G541754
TU613434 lncRNA upstream 43627 71565512 ~ 71565720 (+) True G541741
TU613504 lncRNA downstream 2242 71615938 ~ 71616217 (+) True G541800
TU613525 lncRNA downstream 16792 71630488 ~ 71630879 (+) True G541821
TU613596 lncRNA downstream 77087 71690783 ~ 71692049 (+) True G541892
TU613598 lncRNA downstream 78464 71692160 ~ 71692463 (+) True G541894
TU613632 lncRNA downstream 100204 71713900 ~ 71807250 (+) True G541904
XM_021604956.2 mRNA upstream 987837 70615476 ~ 70621510 (+) False cmc2
XM_021607510.2 mRNA downstream 67905 71681601 ~ 71690360 (+) True LOC110526495
XR_005052233.1 mRNA downstream 348228 71961924 ~ 71967802 (+) False LOC118964930
XM_021607530.2 mRNA downstream 397399 72011095 ~ 72021875 (+) True LOC110526507
XM_021607535.2 mRNA downstream 460454 72074150 ~ 72098245 (+) True LOC110526509
XM_021607537.2 mRNA downstream 504042 72117738 ~ 72135463 (+) False LOC110526510
TU611814 other upstream 987873 70615525 ~ 70621474 (+) False cmc2
TU611817 other upstream 987873 70615525 ~ 70621474 (+) False cmc2
TU611726 other upstream 1055427 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 1124979 70481950 ~ 70484368 (+) True G540179
TU611507 other upstream 1569840 70036194 ~ 70039507 (+) True LOC110525047
TU613619 other downstream 186344 71800040 ~ 71804462 (+) True G541903
TU613820 other downstream 487684 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 537324 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 1051764 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 1151985 72765681 ~ 72766851 (+) True G542890

Expression Profile