RNA id: TCONS_00033919


Basic Information

Item Value
RNA id TCONS_00033919
length 1603
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_016747
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42708669 ~ 42710429 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tactgttccaacttttttaaaatgtataaccaaaattggaatacacGTGTTTTGTTAAaggaaaaacattaataatgtttgttgtattgtctgcaatgaagtacaactcaaagtaaatttagaaatcacttcttacttttttatttgcgttttccatatggtcccaactttttctgttttggggttatataaaacattttataatcacTGAATTGTGCATTGTTTTTCTCCATGTCTGCAAATGTTGAATTTACCTTTACTAGATATCTTTTCAATCTCTTCTCTGCAGAAATGCTCCAGTTTCTTTCTCAGATGAGACAATTTACCAACATCATCAAAAGAGATACGAGAGCTGACAGTGATGCTGGATGAGTCTGTAGATCCAGGAGGAGAAGAGAGAGACTGGAAACTCTACACAAAGACACCACGACAGGAATATAAGAAAATCAGATACTTAACTTTTATTAAGCTCAATGTGCTGTTTGTGAGATCTTTTTTACCTTGAGAAAATGGATGTGATGGTCTGTGTGTGAAAGCTGCTCCAGCTCAGTGTTTCTTCTCCTCAGATCATCAATCTCCTGTTCCAGTTGCTTCAGTCGTTCTTCAGCTCGACCCTCTGCAGCCTTTTGCTGATCTGTGATCAGCTGTGTCACCTCAGAGCAGCTTCTCTCAAAGGAGAAGATGAGCTCAGTAAAGATGCTCTCAGTGTCCTCCACTGCTGCCTGTGCAGAGCGCTGTTaggacacacagagagagaagcaGCAGAATCAGTCATTTACTCAGCTCTTACTGCTGCCACACAGCCTGCTTCCCACAGGGGCTTTAGTGGGACTCAAATGCTCCAGCACTGGGCTCCTCACTGACTGACTGCAGGACAGTCCTAACTGAGTCTCAATCAGCTCTTCCAGCAGCCAACAGTTGATCTTCTGCTAAAAACTCACCTTGTGAGACTCTACAGCTGCTCTCAGCTCCTCTCGCTCCTTCTGTCTCTCCACCATTCTCTGATGGGTTGTTTTTTGCATTTCAGCCAGTTGAATCTGCAGGAATACAAAATGCAAGCTAAAATGAAAGTTGACCCAATCCCAAAAGCTATGTGGGATCAAAACTGTTTCTTAAAATGGGTTAGAAAGATGTATAAAATTATTTCTGTAGCACATACCTTTTTGTCAGTCCACTCTGCTGCAGCTGATACAGTGTCGTGGTTTTTGTGTTTATCCATTGTACACAGATAACAAATACAGCACTGATCTGTTCGACAGAAAATCTCCAGTAGTTTCTCATGTAGAGGGCAGATCATCTCCTGCAGTCGTCCAGTGGCATCAGTCACTTTGTGTCGCTTTCTAGAATGAAATTCTTCATGACGTTGAAAGTCTTGGAGTGAAGGACTGTCTGCACTGAGGGCAGCTGTAGACTCCTTTCCGCTCATCCTGATCCCAGCAGTCTGAAATACAGCTCATGCAGTAACTGTGTCCACAGGGAATGGCCACTGAATCCTTCAGTAGATCCAGACAGATTGAACAGCTGAACTGTTCCTGAGCCAAACAAACACTGGATTCTGCCATTTTTTACAGCACAAACTGAAAGGAATCCTCAACTCTTCGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033395 lncRNA downstream 30287 42678023 ~ 42678382 (-) True XLOC_016746
TCONS_00033917 lncRNA downstream 79751 42628559 ~ 42628918 (-) False XLOC_016744
TCONS_00032846 lncRNA downstream 96262 42609381 ~ 42612407 (-) False XLOC_016744
TCONS_00033916 lncRNA downstream 111076 42596228 ~ 42597593 (-) True XLOC_016743
TCONS_00033915 lncRNA downstream 112139 42595924 ~ 42596530 (-) False XLOC_016743
TCONS_00033920 lncRNA upstream 3370 42713799 ~ 42717726 (-) True XLOC_016748
TCONS_00033921 lncRNA upstream 8608 42719037 ~ 42771871 (-) False XLOC_016749
TCONS_00033922 lncRNA upstream 46462 42756891 ~ 42771978 (-) False XLOC_016749
TCONS_00033396 lncRNA upstream 49124 42759553 ~ 42764475 (-) True XLOC_016749
TCONS_00033397 lncRNA upstream 225452 42935881 ~ 42936238 (-) True XLOC_016751
TCONS_00032847 mRNA downstream 3385 42654740 ~ 42705284 (-) False XLOC_016744
TCONS_00032844 mRNA downstream 3806 42605252 ~ 42704863 (-) False XLOC_016744
TCONS_00032845 mRNA downstream 80641 42605392 ~ 42628028 (-) False XLOC_016744
TCONS_00032843 mRNA downstream 150120 42496523 ~ 42558549 (-) True XLOC_016742
TCONS_00032842 mRNA downstream 156003 42496498 ~ 42552666 (-) False XLOC_016742
TCONS_00032849 mRNA upstream 65795 42776224 ~ 42864472 (-) False XLOC_016750
TCONS_00032850 mRNA upstream 65795 42776224 ~ 42871286 (-) False XLOC_016750
TCONS_00032851 mRNA upstream 104513 42814942 ~ 42827336 (-) False XLOC_016750
TCONS_00032852 mRNA upstream 104798 42815227 ~ 42843797 (-) True XLOC_016750
TCONS_00032853 mRNA upstream 232123 42942552 ~ 42960353 (-) False XLOC_016752
TCONS_00032848 other downstream 3736 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 292881 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 333560 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 761773 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032808 other downstream 1088557 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032856 other upstream 251799 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032894 other upstream 1482370 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1812427 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 2047620 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 2052653 44763082 ~ 44763375 (-) True XLOC_016791

Expression Profile

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