RNA id: TU613673


Basic Information

Item Value
RNA id TU613673
length 239
lncRNA type intronic
GC content 0.47
exon number 2
gene id G541936
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71831761 ~ 71839778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accttcagagccagaggttggctgaccaaggttgatccagtctgaccacacacaactttcttcaccagtgcactgggtagttgatgctcctgttgaggtggatgtaggagtagaggttggagttgtagtagaaggcagagtagttgtttttgtggtagatggagctgtcgaagttaagattgtagtagtgggtgtaggagtcgtggtcgacagaactgttgttgttgttgttgttgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613667 lncRNA upstream 1220 71829400 ~ 71830541 (+) True G541934
TU613632 lncRNA upstream 24511 71713900 ~ 71807250 (+) True G541904
TU613645 lncRNA upstream 81643 71742919 ~ 71750118 (+) False G541915
TU613646 lncRNA upstream 84559 71742919 ~ 71747202 (+) True G541915
TU613644 lncRNA upstream 90877 71737284 ~ 71740884 (+) True G541914
TU613742 lncRNA downstream 113834 71950694 ~ 71951034 (+) True G541993
TU613753 lncRNA downstream 127444 71964304 ~ 71964886 (+) True LOC118964930
TU613754 lncRNA downstream 131722 71968582 ~ 71968789 (+) True G542005
TU613755 lncRNA downstream 133537 71970397 ~ 71970902 (+) True G542006
TU613758 lncRNA downstream 138336 71975196 ~ 71975518 (+) True G542009
XM_021607510.2 mRNA upstream 141401 71681601 ~ 71690360 (+) True LOC110526495
XM_021604954.2 mRNA upstream 1210251 70615491 ~ 70621510 (+) False cmc2
XR_005052233.1 mRNA downstream 125064 71961924 ~ 71967802 (+) False LOC118964930
XM_021607530.2 mRNA downstream 174235 72011095 ~ 72021875 (+) True LOC110526507
XM_021607535.2 mRNA downstream 237290 72074150 ~ 72098245 (+) True LOC110526509
XM_021607537.2 mRNA downstream 280878 72117738 ~ 72135463 (+) False LOC110526510
XM_021607536.2 mRNA downstream 281646 72118506 ~ 72135463 (+) False LOC110526510
TU613619 other upstream 27299 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1210287 70615525 ~ 70621474 (+) False cmc2
TU611817 other upstream 1210287 70615525 ~ 70621474 (+) False cmc2
TU611726 other upstream 1277841 70551795 ~ 70553920 (+) True LOC110526485
TU611739 other upstream 1347393 70481950 ~ 70484368 (+) True G540179
TU613820 other downstream 264520 72101380 ~ 72102474 (+) True G542053
TU613870 other downstream 314160 72151020 ~ 72152394 (+) True G542100
TU614654 other downstream 828600 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 928821 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 1201761 73038621 ~ 73145347 (+) True LOC110526543