RNA id: TU613870


Basic Information

Item Value
RNA id TU613870
length 1351
RNA type TUCP
GC content 0.48
exon number 2
gene id G542100
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72151020 ~ 72152394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGACTTTACTGCGCCAATAATCAATAATAGTTATAGCAATAGGAAAAATAATGCCACTTACAAGGGTCTACTACAAATACAATTGTTTACATTACACTTCCACCAGTATACTTGACAGCTAAATTCAATGTTCTTTGGACTTCAAAACAGCCATATACATTAGCATTACTGACAAGTGCTTTTCATGTCTGAAGTTAATATTcaaaatacacattttacattGATTCTGATAAAGTCAAGAGGCCGAAACCATTCCCTTGATTCAGAAAAAAACTCCACTGGTTGAGGTTCTACAGGGAAGCACTAAAATACTGTCCATATTTAGGGTCCTCCATTATTTCCAGAGGACTTCAATTGATTGATGCATGTGTACTCTCAGTCCTCCTCTTTCTCTGACACCTTGCGGAAGTTCTTCCTTTTGATGTTCCTACTAATGACAAAGCCAATAGGCGGCTGATCCTTCCTATCAATCAGCACGCCCTCTGCATCCCCCACCGGTGTCCACTTCCTCTTCCGCTCACTCTCCTTTGGGCGTTGGGGGGCGATTGCTTGGCCTAtaccctcctcttcttcatcatctAAGTGACAGAGACCCATCCCTGCCTTAGTTCGATCAGGCTTGTTAACTTCTGCAGATTCATCTTTCTGTGGCCGGCTAGGTCTGGAAAACACAATCTTATGCTCTGAGCTACTACTCTGGCCTTGGTTGAAAGTAGGTGTAAAAGGCTCTTCAGGATCATCTTCCATCgtgttctccttctccttctgctGCAGGCTTTGTATGTACTGCTGAGCCACCATGCTATTCTTGCTGTCACTGGTCTCTGGCACATCCTCCAGGTCGTAGCGCGTCCAGCGCTCAGGATTCACCAGGTAATCTGGCACTCCTCTCTTCTGAGGAGGCTTGCTGACCAATTCCCCCACCTTCTCCCCATACTTCTTTCCACTCGGCAGcagtgggggtggagggggacgTGCAAAGACCCCATCAATGACATTGTCCTGGCCCAGATGGGACGAGGACAGCTTAGCGGCACTCTCCAGGCAATCAAAGATGCTTCGGCTGCGGTTGGAAAAGCTTGAGCTGCCACCTGTCAGACTGAATGCGGGTTTCTTGGGACCGGGACCAGGGCAAGAGTTCTGGTGCTCTTCATCATCAGATGAGGACAAATCTTCCACCTCTGGGTCTATGGACTCATTACGCTCTTCAGGGTCGGAGTCACTCAGAGAGAGGTTATCTGTCAGCTTGTTACGTCCACCGTCTCCGTGGTCCTCTTGCTCACACATTGCTCTCAAGGGCCTGGGTCTGATGCCACAGGAAAAAAACAACTTTCAAACAGTCAAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613861 lncRNA upstream 8461 72141516 ~ 72142559 (+) True G542092
TU613779 lncRNA upstream 148801 72001916 ~ 72002219 (+) True G542022
TU613778 lncRNA upstream 149799 72001016 ~ 72001221 (+) True G542021
TU613760 lncRNA upstream 173539 71977214 ~ 71977481 (+) True G542011
TU613759 lncRNA upstream 174079 71976616 ~ 71976941 (+) True G542010
TU613914 lncRNA downstream 121922 72274316 ~ 72292811 (+) True G542137
TU613943 lncRNA downstream 144350 72296744 ~ 72296989 (+) True G542162
TU613908 lncRNA downstream 189518 72341912 ~ 72343982 (+) True G542131
TU613960 lncRNA downstream 192543 72344937 ~ 72345730 (+) True G542179
TU613961 lncRNA downstream 194433 72346827 ~ 72347198 (+) True G542180
XM_021607537.2 mRNA upstream 15557 72117738 ~ 72135463 (+) False LOC110526510
XM_021607536.2 mRNA upstream 15557 72118506 ~ 72135463 (+) False LOC110526510
XM_021607538.2 mRNA upstream 15557 72118509 ~ 72135463 (+) True LOC110526510
XM_021607535.2 mRNA upstream 52775 72074150 ~ 72098245 (+) True LOC110526509
XM_021607530.2 mRNA upstream 129145 72011095 ~ 72021875 (+) True LOC110526507
XM_021607549.2 mRNA downstream 4796 72157190 ~ 72181309 (+) False LOC110526514
XM_021607551.2 mRNA downstream 4796 72157190 ~ 72181309 (+) False LOC110526514
XM_036980891.1 mRNA downstream 4796 72157190 ~ 72181309 (+) True LOC110526514
XR_005052234.1 mRNA downstream 32678 72185072 ~ 72207042 (+) False LOC110526515
XM_021607552.2 mRNA downstream 32679 72185073 ~ 72207042 (+) True LOC110526515
TU613820 other upstream 48546 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 346558 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1529546 70615525 ~ 70621474 (+) False cmc2
TU611817 other upstream 1529546 70615525 ~ 70621474 (+) False cmc2
TU611726 other upstream 1597100 70551795 ~ 70553920 (+) True LOC110526485
TU614654 other downstream 513066 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 613287 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 886227 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1220411 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 2135384 74287778 ~ 74288138 (+) True G544565

Expression Profile