RNA id: TU613943


Basic Information

Item Value
RNA id TU613943
length 246
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G542162
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72296744 ~ 72296989 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaaaatgtttacccccaatttcatggtatccaattgttgtagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtcatgcttcctccgatacacaacccaaccagccgcactgcttcttaacacagcgcgcatccaacccggaagccagccgcaccaatgtgtcggaggctacaccgtgcacctggcaaccttggctagcggacatccctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613914 lncRNA upstream 3933 72274316 ~ 72292811 (+) True G542137
TU613861 lncRNA upstream 154185 72141516 ~ 72142559 (+) True G542092
TU613779 lncRNA upstream 294525 72001916 ~ 72002219 (+) True G542022
TU613778 lncRNA upstream 295523 72001016 ~ 72001221 (+) True G542021
TU613760 lncRNA upstream 319263 71977214 ~ 71977481 (+) True G542011
TU613908 lncRNA downstream 44923 72341912 ~ 72343982 (+) True G542131
TU613960 lncRNA downstream 47948 72344937 ~ 72345730 (+) True G542179
TU613961 lncRNA downstream 49838 72346827 ~ 72347198 (+) True G542180
TU613962 lncRNA downstream 50461 72347450 ~ 72348095 (+) True G542181
TU613964 lncRNA downstream 53097 72350086 ~ 72350298 (+) True G542183
XM_036979109.1 mRNA upstream 1847 72287031 ~ 72294897 (+) False LOC100136249
NM_001124513.1 mRNA upstream 2840 72287060 ~ 72293904 (+) True LOC100136249
XM_036980893.1 mRNA upstream 52280 72221348 ~ 72244464 (+) False LOC110526517
XM_036980892.1 mRNA upstream 52280 72221349 ~ 72244464 (+) True LOC110526517
XR_005052234.1 mRNA upstream 89702 72185072 ~ 72207042 (+) False LOC110526515
XM_036980894.1 mRNA downstream 1004 72297993 ~ 72339964 (+) False mybpc3
XM_036980896.1 mRNA downstream 1004 72297993 ~ 72339964 (+) False mybpc3
XM_036980897.1 mRNA downstream 1004 72297993 ~ 72339964 (+) False mybpc3
XM_036980901.1 mRNA downstream 1004 72297993 ~ 72339964 (+) False mybpc3
XM_036980902.1 mRNA downstream 1004 72297993 ~ 72339964 (+) False mybpc3
TU613870 other upstream 144350 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 194270 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 492282 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1675270 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 368471 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 468692 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 741632 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1075816 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1990789 74287778 ~ 74288138 (+) True G544565

Expression Profile