RNA id: TU613908


Basic Information

Item Value
RNA id TU613908
length 2071
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G542131
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72341912 ~ 72343982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGATCTGTCTCAGAACAATCCAGAAATGAAGGCCTTTGTGTGGCACCAACATTCAGCGCCAGAGGCTTAGCTTGCACTTGGTACATGCTGCACTCACCTTTCAAAGCCAACTTCCTGACACCTGAAATAACCTTGTCCATGGCCCAGACATTCTGCTCCTCTTTAAGCAATAAATTAGAACGATCCTGGGGGTAAAGCACAGTTCAACTACATTATTTTCAGTCCaagagacaaaacaaacaaagtCATAAAAGTCTCCACAACAACTAGGAagactgttgataaaacagtgcTCTCTTCCAATCCCACGTGACATCCAAGACTTTATCACTCATAGCGAGGAAGAATTGTTGACACTTAttgtcaaagataataaacatTTAAGTCATTGTCTTGTACTCTTGAGGAATGAATACAGGGCTTGTGAAGATACATGAACAGATTCATACTGGAGATTCAGTTGGCTCACATTGGGAGGGCTGAAAATGCAGCTGTCAGATTATATTTAACACATTGTCAGTACCCCTTCATTTAAAGCCGCTTCCATAAAATTCTCCTTTCAGTTACTTTATATTCTCATATGAAAAACAACCCTAGAATGAGGATTATGATTACATTTGCTACATATACAAATGAATAGCGATTATGGTAAGGCTTTAAAATCGACAGACCAGggaataacaataaaataaaacatatagcTAGCTACGGGCAGAACCTACAAAAAGATGGCACATAGATGCTTGCCTTAGCAAGAGACGTGACAGATGAATTCAGGCTTGTAACATCTTGATAATGAGTTTGCTCTAAAACAAGAAGCAGGCACTGGTGGCAAGGTTTCCTCTTTTGTTACATATTTGACAGCCAGTTTGGTGTTATCACACACAGGAATCAGTTGTAAATCCTGAAGGGCAAAACAAGTGTTGGCCAAAAGTCTCAGGTCTCAGAGAAGTCTCATTTAATGCCAGATTCCTTTTTTTGTGACAGTTGAGTCTGTTTCACACAGTGATTAAAGAAGTGCTCCCTGAATGATTTGTGTGCAGGGACCCACATGCACATGTTTTGTTGTTTATCAAAAACCTTTACTTTTTGTTATAgtgtcacagacacagacacacacacagacacacacacacacagacacacacacagacacacacacagacacacacacacacagacaaagagtttCTCAGTCTTTGATGCGAGGTATGTTGTATGCGTAGTGGACCAGAGGGAGCCCTCGGCTCTGGCAGAAGCAGGCTCGTCCACAGGCCTGCACCTGGTCTGAACTGTCGGACACAAACGAGTCCCCCTCGTCAGCGTACTCTGACTGGGCAGAGAGGGTGCCGCTGTCTGCCCAGTATCCCTCCGTACGCTGGCCCGCTGTCGCACCAGCCGAGAGGGTAGGGCAGCTGTGGGACTTCACCAAGTGTCTGCAGACTGAtgttgaggaggaagaggtcctGGCGTGTAGAGCCACCTGGCAGCGCTCACACATGCCTGTTTCCCCACAGAGCTGGGAGTACACCCCACAGTCATAGCCCAGCCGTGTGGAGGAGtctccatccccatccacaacccCAGAGCGCCCTGCACACTGCCCAGCCTTCATCCCCCGGGCTACAGCTCCATGGCCCCGCAGCCGCAGCCAGTCCTCCCGGAAGGCGGGGCTGAAGAAAACGTAGAGCACGGGGTTAAGGCATGCCGGTAGGGGGAAGAAGATGAGCGTGACGGACTTGGCGATCTCAGGGCCGCCTGCGGTGCCAGACCTGGCCAGTAGAGGGGCAAAGGAGAAGGCTGCCACAGGACAGAAGAAGATGCAGTTGGTGAATATGAGCCATGCCACATGGCGTACGGCCCCTGCCTGCTCCTGGTCTGCCAGCTCCACCCTGCCCAAGCCACAGTACAGCTGGGTGTACACTGCTGCTGTGAACAGGTAGGCCAGAGCGTTGAGCAGCACCAGGGCCACAGTGACCCCCAGTGCAGGGCCCTCACCGCCAGAGAAGGGTAAACAGAGAGGGGAGGCTGAAGGGTCGCTGGTACTGAAGAGGGGCAGGCAGGCTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613943 lncRNA upstream 44923 72296744 ~ 72296989 (+) True G542162
TU613914 lncRNA upstream 49101 72274316 ~ 72292811 (+) True G542137
TU613861 lncRNA upstream 199353 72141516 ~ 72142559 (+) True G542092
TU613779 lncRNA upstream 339693 72001916 ~ 72002219 (+) True G542022
TU613778 lncRNA upstream 340691 72001016 ~ 72001221 (+) True G542021
TU613960 lncRNA downstream 955 72344937 ~ 72345730 (+) True G542179
TU613961 lncRNA downstream 2845 72346827 ~ 72347198 (+) True G542180
TU613962 lncRNA downstream 3468 72347450 ~ 72348095 (+) True G542181
TU613964 lncRNA downstream 6104 72350086 ~ 72350298 (+) True G542183
TU613965 lncRNA downstream 7554 72351536 ~ 72352091 (+) True G542184
XM_036980894.1 mRNA upstream 1948 72297993 ~ 72339964 (+) False mybpc3
XM_036980896.1 mRNA upstream 1948 72297993 ~ 72339964 (+) False mybpc3
XM_036980897.1 mRNA upstream 1948 72297993 ~ 72339964 (+) False mybpc3
XM_036980901.1 mRNA upstream 1948 72297993 ~ 72339964 (+) False mybpc3
XM_036980902.1 mRNA upstream 1948 72297993 ~ 72339964 (+) False mybpc3
XM_021607561.2 mRNA downstream 226835 72570817 ~ 72595606 (+) False LOC110526523
XM_036980904.1 mRNA downstream 226835 72570817 ~ 72595606 (+) False LOC110526523
XM_036980906.1 mRNA downstream 226835 72570817 ~ 72595606 (+) False LOC110526523
XM_021607562.2 mRNA downstream 226969 72570951 ~ 72595606 (+) False LOC110526523
XM_036980903.1 mRNA downstream 227647 72571629 ~ 72595606 (+) True LOC110526523
TU613870 other upstream 189518 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 239438 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 537450 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1720438 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 321478 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 421699 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 694639 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1028823 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1943796 74287778 ~ 74288138 (+) True G544565

Expression Profile