RNA id: TU613960


Basic Information

Item Value
RNA id TU613960
length 794
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G542179
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72344937 ~ 72345730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCAGGACAGTGTGAGGTCATTTGGATGAATTACTGGGATTCTGACCTGAGTTTGGGGAGGCTCTTCGcagtaaatacatttttcatcTGCAGGTTTCCTGTGAGTTTCAGTTGGTTCAGTGAACTCAGTCCAGTTGTTGGAATGCTGGTCAGCGAGTTTAAGCTCAGGTCTCTAAAACAAACAGGACATATTAGCATACATACATTCCTGGAACACACTACTAGCATATGTACACATTTGTTTAAACAGTAATGTATTTGTTATCATGACTTGTATGAGAACAGATTTAGTTTTTACCACAGTACAGTGTCCTACTCACAGGTTTGTTAGCACCGTCAAATAGAGGAAAGCATCTCTGTGGATGGTTTTCATTTCATTTCTACTCAGGTCCCTGCAGTAAAGAAAATTACTTAATGATGTGTTCAGAATGAGGGCAGCAAATTAAGCATGCTTTTTTAAATTAGCCTCTGGCATGAGCTAGTGAAAGCAGAACTGAGTTCATTTCCAATGAGATCTACTTAGGCCCTTCACCTTTAAGCCTCAAGGTACTATAggctgcaagtgtgtgtgtgtgtgagagtgtgtgtgtgtgtgtgtactcacagcaAGCGCAGGGCAGACAGGCCCTGGAATGTGTCCCTGTCGATTTGCTGGATGTGGTTGTGCTGCAGGCTTCTATAATTAGGGCAGAACACAGAATATACACTCAGGAAAAGGTAGAACGTGGGGGTCATCTTGAGTGTAATGTTTAAAAATGTGTTTGTGCTCTTGCTCACATTCCCAACAATATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613908 lncRNA upstream 955 72341912 ~ 72343982 (+) True G542131
TU613943 lncRNA upstream 47948 72296744 ~ 72296989 (+) True G542162
TU613914 lncRNA upstream 52126 72274316 ~ 72292811 (+) True G542137
TU613861 lncRNA upstream 202378 72141516 ~ 72142559 (+) True G542092
TU613779 lncRNA upstream 342718 72001916 ~ 72002219 (+) True G542022
TU613961 lncRNA downstream 1097 72346827 ~ 72347198 (+) True G542180
TU613962 lncRNA downstream 1720 72347450 ~ 72348095 (+) True G542181
TU613964 lncRNA downstream 4356 72350086 ~ 72350298 (+) True G542183
TU613965 lncRNA downstream 5806 72351536 ~ 72352091 (+) True G542184
TU613967 lncRNA downstream 8991 72354721 ~ 72355254 (+) True G542186
XM_036980902.1 mRNA upstream 4973 72297993 ~ 72339964 (+) False mybpc3
XM_021607561.2 mRNA downstream 225087 72570817 ~ 72595606 (+) False LOC110526523
XM_036980904.1 mRNA downstream 225087 72570817 ~ 72595606 (+) False LOC110526523
XM_036980906.1 mRNA downstream 225087 72570817 ~ 72595606 (+) False LOC110526523
XM_021607562.2 mRNA downstream 225221 72570951 ~ 72595606 (+) False LOC110526523
XM_036980903.1 mRNA downstream 225899 72571629 ~ 72595606 (+) True LOC110526523
TU613870 other upstream 192543 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 242463 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 540475 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1723463 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 319730 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 419951 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 692891 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1027075 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1942048 74287778 ~ 74288138 (+) True G544565

Expression Profile