RNA id: TU613961


Basic Information

Item Value
RNA id TU613961
length 372
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G542180
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72346827 ~ 72347198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGATTCAACTGGTCAACTAATGATCAAGcactcaatgagttgaatcaggtgagtttgtTTGGAGCTACAAccaaaatgtgtgctgttggaggtactggaggactggagttggggaaCACTGTGCTAGTATGAATGTGTGAAGGCTTAAGGTTCTATTCTATAATATTTGTTGACAGTAGGACTGGCTTTGAAGTATGGTCTTACATGGTGCGGAGCAAAGGGTTCTTGTGGAAGGCTCCCTCAGGTACGGCTGCTATGTCGTTGCTGTGAAATCCACTGGAGGAAAGTGAAAATATACACAGTGAAAATTATTCTAACCACAATCTTTGGGATGAAGGTGGAATATTAAATATGCAACGACACATTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613960 lncRNA upstream 1097 72344937 ~ 72345730 (+) True G542179
TU613908 lncRNA upstream 2845 72341912 ~ 72343982 (+) True G542131
TU613943 lncRNA upstream 49838 72296744 ~ 72296989 (+) True G542162
TU613914 lncRNA upstream 54016 72274316 ~ 72292811 (+) True G542137
TU613861 lncRNA upstream 204268 72141516 ~ 72142559 (+) True G542092
TU613962 lncRNA downstream 252 72347450 ~ 72348095 (+) True G542181
TU613964 lncRNA downstream 2888 72350086 ~ 72350298 (+) True G542183
TU613965 lncRNA downstream 4338 72351536 ~ 72352091 (+) True G542184
TU613967 lncRNA downstream 7523 72354721 ~ 72355254 (+) True G542186
TU613968 lncRNA downstream 8379 72355577 ~ 72355845 (+) True G542187
XM_036980902.1 mRNA upstream 6863 72297993 ~ 72339964 (+) False mybpc3
XM_021607561.2 mRNA downstream 223619 72570817 ~ 72595606 (+) False LOC110526523
XM_036980904.1 mRNA downstream 223619 72570817 ~ 72595606 (+) False LOC110526523
XM_036980906.1 mRNA downstream 223619 72570817 ~ 72595606 (+) False LOC110526523
XM_021607562.2 mRNA downstream 223753 72570951 ~ 72595606 (+) False LOC110526523
XM_036980903.1 mRNA downstream 224431 72571629 ~ 72595606 (+) True LOC110526523
TU613870 other upstream 194433 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 244353 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 542365 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1725353 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 318262 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 418483 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 691423 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1025607 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1940580 74287778 ~ 74288138 (+) True G544565

Expression Profile