RNA id: TU613962



Basic Information


Item Value
RNA id TU613962
length 646
lncRNA type intronic
GC content 0.42
exon number 1
gene id G542181
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72347450 ~ 72348095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTCATAAAACATGGTAAATTCCATATATGTTTAATATTGTTTTTCCATCAGAAATATGAAAGGACACCATCTGGAGAACAGTTTTGACTGTCCACATGAAACGTTGTGAAGTCATGATCTATTGTTCAAGATGTCCCAGTGACACTGTGAAAACAAAGGCCAGGTAATGTACCTAATGTGCCTGTGTCTTTTATCTAGTAGACATGTCCCTTATATCCATCACAAGTTGAAGGGATCAAGAAACCATTGTACAGGAACGTTAAGACAgcttctctctctactacagcgctgacagacaggagaggagagcaacAAAGGTAAGGAAAACAGATAAAGGAGTGTATTCTTGGGGGCACTAGTCAGACCCCATCATTAATCTCTCAGCTCCCCCTGCCAAGGTTCACAGTTCCACTGAGACACATCAACAGCTCACATTTCTACAAAAACACTGCAGCCTGCACGGAACCAGAAAATGATATCACCTCTAGGCCACATGCCGCTTACTGACTAAACAACCTAATCACTCAAAGTTGACGTTTCAGATTTAAAAAATCTCACTAAGGGAATCTGTGTACGCATGtgcatccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttccatttgtg

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU613961 lncRNA upstream 252 72346827 ~ 72347198 (+) True G542180
TU613960 lncRNA upstream 1720 72344937 ~ 72345730 (+) True G542179
TU613908 lncRNA upstream 3468 72341912 ~ 72343982 (+) True G542131
TU613943 lncRNA upstream 50461 72296744 ~ 72296989 (+) True G542162
TU613914 lncRNA upstream 54639 72274316 ~ 72292811 (+) True G542137
TU613964 lncRNA downstream 1991 72350086 ~ 72350298 (+) True G542183
TU613965 lncRNA downstream 3441 72351536 ~ 72352091 (+) True G542184
TU613967 lncRNA downstream 6626 72354721 ~ 72355254 (+) True G542186
TU613968 lncRNA downstream 7482 72355577 ~ 72355845 (+) True G542187
TU613969 lncRNA downstream 8217 72356312 ~ 72356652 (+) True G542188
XM_036980902.1 mRNA upstream 7486 72297993 ~ 72339964 (+) False mybpc3
XM_021607561.2 mRNA downstream 222722 72570817 ~ 72595606 (+) False LOC110526523
XM_036980904.1 mRNA downstream 222722 72570817 ~ 72595606 (+) False LOC110526523
XM_036980906.1 mRNA downstream 222722 72570817 ~ 72595606 (+) False LOC110526523
XM_021607562.2 mRNA downstream 222856 72570951 ~ 72595606 (+) False LOC110526523
XM_036980903.1 mRNA downstream 223534 72571629 ~ 72595606 (+) True LOC110526523
TU613870 other upstream 195056 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 244976 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 542988 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1725976 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 317365 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 417586 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 690526 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1024710 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1939683 74287778 ~ 74288138 (+) True G544565

Expression Profile


TU613962 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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TU613962 Expression in each Bioproject

Bar chart with 14 bars.
TU613962 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
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