RNA id: TU613967


Basic Information

Item Value
RNA id TU613967
length 534
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G542186
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72354721 ~ 72355254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgaatgtctgtgtgtttgattTTGTGTGGGTTGTGCCCGAGCACTCACCAGTACTGGTCTTTGAACCCTTGGCTCAATGTACAGTCACAGAACATACAGGTATTATAtgagtgtttgtctgtgtgtgcgtgttgtaagTGTGTGGAGGACCAATGAGCGGCACACTTACAGGACTTTGAGCTGATGTAGTCCAGACAGAGCGTCAGGGTGGATGAATGAGAGGTCATTTCCTGCCAGTCgtctgaggtagagagagagacaaatagagagagagagagagagaggaagagggaaagaaaAAGGATGGTGATCAATTCAGAATTGCATCGGAAGCTAAACAAGGATTCGTACAGTAATCTATATGTTGTTGGTACAACTTTCAAAGTTCTCAATTTAACAGCTTCACTTTGAAATGTTAATACATACAAGATTGAAAGTCATTGAccaaaaaacaaatgaaaacacCTCACAGGTTCCAGTTTGTGTTATCaggcatagcatagcatagcatagcataacataacataacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613965 lncRNA upstream 2630 72351536 ~ 72352091 (+) True G542184
TU613964 lncRNA upstream 4423 72350086 ~ 72350298 (+) True G542183
TU613962 lncRNA upstream 6626 72347450 ~ 72348095 (+) True G542181
TU613961 lncRNA upstream 7523 72346827 ~ 72347198 (+) True G542180
TU613960 lncRNA upstream 8991 72344937 ~ 72345730 (+) True G542179
TU613968 lncRNA downstream 323 72355577 ~ 72355845 (+) True G542187
TU613969 lncRNA downstream 1058 72356312 ~ 72356652 (+) True G542188
TU613970 lncRNA downstream 2269 72357523 ~ 72357919 (+) True G542189
TU613975 lncRNA downstream 10292 72365546 ~ 72365752 (+) True G542194
TU613976 lncRNA downstream 10621 72365875 ~ 72366193 (+) True G542195
XM_036980902.1 mRNA upstream 14757 72297993 ~ 72339964 (+) False mybpc3
XM_021607561.2 mRNA downstream 215563 72570817 ~ 72595606 (+) False LOC110526523
XM_036980904.1 mRNA downstream 215563 72570817 ~ 72595606 (+) False LOC110526523
XM_036980906.1 mRNA downstream 215563 72570817 ~ 72595606 (+) False LOC110526523
XM_021607562.2 mRNA downstream 215697 72570951 ~ 72595606 (+) False LOC110526523
XM_036980903.1 mRNA downstream 216375 72571629 ~ 72595606 (+) True LOC110526523
TU613870 other upstream 202327 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 252247 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 550259 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1733247 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 310206 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 410427 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 683367 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1017551 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1932524 74287778 ~ 74288138 (+) True G544565

Expression Profile