RNA id: TU613970


Basic Information

Item Value
RNA id TU613970
length 397
lncRNA type intronic
GC content 0.41
exon number 1
gene id G542189
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72357523 ~ 72357919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCTGCCTGGCATTCCTCCACTTACAATGCGATGAAAAGTAAATTGCCCTTTGACAAAGCAGATGAAGTAGGCCTAGTGTTAGGAAAAGAAGGGAGTGAAGACTGGTCCGAGATGATAGACACAGACAGGCTAAAATAACATGGGCACAGAAGCAGAATAATGTTAGCTGGTCATTTTGCATTCTCAGGGTTACATGTTACCTGATATCAGGTAGACAGATCTTATCCTTACTTCCAGCTCTGAACCAGACAGAGGGGTATTTCAAGAGTAAAAAAATGACAAAGATTAGATATGCTCATTGAATGGGTCCCAGAACTGAGACATGCGGTTGCCACCCTGCAAATTCTCAAAGAAAACACAATGAAAGAAAGTCAAATATCTCACATACATGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613969 lncRNA upstream 871 72356312 ~ 72356652 (+) True G542188
TU613968 lncRNA upstream 1678 72355577 ~ 72355845 (+) True G542187
TU613967 lncRNA upstream 2269 72354721 ~ 72355254 (+) True G542186
TU613965 lncRNA upstream 5432 72351536 ~ 72352091 (+) True G542184
TU613964 lncRNA upstream 7225 72350086 ~ 72350298 (+) True G542183
TU613975 lncRNA downstream 7627 72365546 ~ 72365752 (+) True G542194
TU613976 lncRNA downstream 7956 72365875 ~ 72366193 (+) True G542195
TU613977 lncRNA downstream 8904 72366823 ~ 72367097 (+) True G542196
TU613978 lncRNA downstream 9403 72367322 ~ 72367678 (+) True G542197
TU613979 lncRNA downstream 9963 72367882 ~ 72368587 (+) True G542198
XM_036980902.1 mRNA upstream 17559 72297993 ~ 72339964 (+) False mybpc3
XM_021607561.2 mRNA downstream 212898 72570817 ~ 72595606 (+) False LOC110526523
XM_036980904.1 mRNA downstream 212898 72570817 ~ 72595606 (+) False LOC110526523
XM_036980906.1 mRNA downstream 212898 72570817 ~ 72595606 (+) False LOC110526523
XM_021607562.2 mRNA downstream 213032 72570951 ~ 72595606 (+) False LOC110526523
XM_036980903.1 mRNA downstream 213710 72571629 ~ 72595606 (+) True LOC110526523
TU613870 other upstream 205129 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 255049 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 553061 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1736049 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 307541 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 407762 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 680702 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1014886 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1929859 74287778 ~ 74288138 (+) True G544565

Expression Profile