RNA id: TU613978


Basic Information

Item Value
RNA id TU613978
length 357
lncRNA type intronic
GC content 0.38
exon number 1
gene id G542197
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72367322 ~ 72367678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAAGTGATTGTAGTCTAAGAAAGTGAAAGTCCAGGTGCCAGGCCAAGGAATATGCTATAGCTTGTATGCTTTTCAGTATGGTAAAATACTTCGGTATAAGAGGGGTCATATCAAGGAAAGGTCAGCAAGTGAATGAGTTTGGACCAGCATGAAACATTTTGGCAACCATTGCATTAAAATAATAGCCTAGccaatactgtatatactgtaccaacCTTCAATTTTATGGGCTACTTTTCCTCTGGCTGTTCTTCATTTTTTGTGTTTGCTCTCTCATACCAACCACAATAATGTGTTTGTTATCAGTTGAATAACTGATCCACAGCCCAAAGTTGTAAAAACGCACTCGATTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613977 lncRNA upstream 225 72366823 ~ 72367097 (+) True G542196
TU613976 lncRNA upstream 1129 72365875 ~ 72366193 (+) True G542195
TU613975 lncRNA upstream 1570 72365546 ~ 72365752 (+) True G542194
TU613970 lncRNA upstream 9403 72357523 ~ 72357919 (+) True G542189
TU613969 lncRNA upstream 10670 72356312 ~ 72356652 (+) True G542188
TU613979 lncRNA downstream 204 72367882 ~ 72368587 (+) True G542198
TU613983 lncRNA downstream 7595 72375273 ~ 72375600 (+) True G542202
TU614033 lncRNA downstream 80670 72448348 ~ 72455351 (+) False G542250
TU614032 lncRNA downstream 82913 72450591 ~ 72455351 (+) True G542250
TU614600 lncRNA downstream 228066 72595744 ~ 72595981 (+) True G542741
XM_036980902.1 mRNA upstream 27358 72297993 ~ 72339964 (+) False mybpc3
XM_021607561.2 mRNA downstream 203139 72570817 ~ 72595606 (+) False LOC110526523
XM_036980904.1 mRNA downstream 203139 72570817 ~ 72595606 (+) False LOC110526523
XM_036980906.1 mRNA downstream 203139 72570817 ~ 72595606 (+) False LOC110526523
XM_021607562.2 mRNA downstream 203273 72570951 ~ 72595606 (+) False LOC110526523
XM_036980903.1 mRNA downstream 203951 72571629 ~ 72595606 (+) True LOC110526523
TU613870 other upstream 214928 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 264848 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 562860 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1745848 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 297782 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 398003 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 670943 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1005127 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1920100 74287778 ~ 74288138 (+) True G544565

Expression Profile