RNA id: TU613979


Basic Information

Item Value
RNA id TU613979
length 706
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G542198
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72367882 ~ 72368587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCGGGACAGTGGTCAGACCTTTCCCAGAGCAATCGGCGCCTCCGTCCTCGTCGCAGCTGCATGAGGACGAACAAATAGCCGGAGTGGATTGTCCTTGACCAGCCGCACCATTCCGTAGTGAAAACAACCGCAAAAATATCCAGATGACAAACACGCGCATGTTCTTCTTCTGTTCAGACGGAGCAAAATGGCTTTACGTGTTTCTCTTATAAGGACATGTAGGCCAATTTTCATGTGACTGCTCTGTTGTGATGGCTTGTCCAAGAAGCTTGAATATGTATTCTTGTTGATAGGTAGTCGACCACTTCAAGGATATAACATGTTAATGCATCAGTCCCACCAAACATATATCCTTAACTACCCCTGTCAAATCTGGGACATTTTCTTTACTCAAACAATGCGGTTTACCTTGCACTAAGTGTCCTCCTATTCATCCCGTGTGGAGTATTGGTCCCATAAAAATAAGTAGCACCCGTCCACACAAACGACAAAATTGGCACCTTTTGCCTTTTCCGTTTTCGTTGTCCCATTAAATCAGAAAACCAGGCGGATCCGTGCGTGGACAAAATAAGAAGCCTCAATACAATTCTCCAACCGAAATGGGAAACACTTGGTGACTTATTTTTGCTATCGTTTCGCTCCTGATTTGTTTCCTGTAGAAAAACACAGTCAGCTTTCAGCCATTCCTCACGTTTCCTTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU613978 lncRNA upstream 204 72367322 ~ 72367678 (+) True G542197
TU613977 lncRNA upstream 785 72366823 ~ 72367097 (+) True G542196
TU613976 lncRNA upstream 1689 72365875 ~ 72366193 (+) True G542195
TU613975 lncRNA upstream 2130 72365546 ~ 72365752 (+) True G542194
TU613970 lncRNA upstream 9963 72357523 ~ 72357919 (+) True G542189
TU613983 lncRNA downstream 6686 72375273 ~ 72375600 (+) True G542202
TU614033 lncRNA downstream 79761 72448348 ~ 72455351 (+) False G542250
TU614032 lncRNA downstream 82004 72450591 ~ 72455351 (+) True G542250
TU614600 lncRNA downstream 227157 72595744 ~ 72595981 (+) True G542741
TU614601 lncRNA downstream 227786 72596373 ~ 72596662 (+) True G542742
XM_036980902.1 mRNA upstream 27918 72297993 ~ 72339964 (+) False mybpc3
XM_021607561.2 mRNA downstream 202230 72570817 ~ 72595606 (+) False LOC110526523
XM_036980904.1 mRNA downstream 202230 72570817 ~ 72595606 (+) False LOC110526523
XM_036980906.1 mRNA downstream 202230 72570817 ~ 72595606 (+) False LOC110526523
XM_021607562.2 mRNA downstream 202364 72570951 ~ 72595606 (+) False LOC110526523
XM_036980903.1 mRNA downstream 203042 72571629 ~ 72595606 (+) True LOC110526523
TU613870 other upstream 215488 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 265408 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 563420 71800040 ~ 71804462 (+) True G541903
TU611814 other upstream 1746408 70615525 ~ 70621474 (+) False cmc2
TU614654 other downstream 296873 72665460 ~ 72666872 (+) True saa
TU614766 other downstream 397094 72765681 ~ 72766851 (+) True G542890
TU614905 other downstream 670034 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 1004218 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1919191 74287778 ~ 74288138 (+) True G544565

Expression Profile