RNA id: TU614997


Basic Information

Item Value
RNA id TU614997
length 1324
RNA type TUCP
GC content 0.45
exon number 7
gene id G543091
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72600275 ~ 72721818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttttgtcttttttttttaatAATCCAGAGGGTTTCATTTATTGACAACTGCAGTCAAAACAAACAGGCTAGACAGGCAATTGGAGGGGAAAGGGCTACTGGCTTATAGGAACGGGAGGGAATAGCATAGCACAAACTAAGGATTCAAGGATGAACTTGATTGATGCCAATCCTATAGATATATCAAGCAAGACAAACACAGCTATAGGATGTAGCAAGAAAATGGAGGGTCTATGTGCTCTCTTTGCCCAAAGTGTGTTTGTCAAACAGGTACTCGGCCATGCCGTTCTGGGGGGCACCCATCCGGCGGAGGTTGGTCACCCAGTCACCCAGCTCCTTTATGGACTTCACCTGCTCGTCCAGGTAGTGTGTCTCAATGAAGTCACACATCTGAGCGTTGTTATCAGCGCAGACCTTGTGCAGGTCCAGCAGGGACTGGTTTACACTCTTCTCCAGCTGCAGGGCACTCTCAAGGGCCTCCACACCGCAACCCCACTCATCCTTCTCTGGTTTCCTTGACGTCCTGCAGGAAGATTCTCCCTCCCCTCTGGTTCTGAACTTTCATCAGCTTCTCAGCGTGCTCACGTTCTTCGTGGGACTGGTTCTTGAAAAACTTAGCAAAGTTGTGCAGGGCCTGGTCATCACGATCAAAGTAATACGCATGGACAGATAAACATAGGAAGCGTACAGCTCCAGGTTGATCTGCCGGTTGATGGCAGCCTCACAGTCCTGATGGAAGTTCTGTCTCACCAGAGGCATGTTTCTGTTTTTTCTGGTCCGAAGAGGTGGTGTGAGTGATTCGAATTGTTCGTTTCTACGATGTTACGGATAGCTTGATCTAATTTGGTTTTCAAAAGGGATGAAATCAAAAAGAAATTGCTTCAAAAGAGTAGAAGGTTGCCGTTCAAGCACTGTTGAAGCAGGTAACCTTTACTCTCGTCTGCAAACTGATATGTGCCCCCTACTTGGCAGGGATGGCTCAAAGCTGTTTGCTTGGTGCTGATGCTGGGATAGAGCTAATGCCAGCAGAGAGGATCCAGTGTAAAACGTTTATTTAGGCTCAGGAGAAAATAAGTTCACTGATAAAAAACACTGGATCAAAATAGATTTTAAGCTTGCAAGAGAAAAGCTTGATACTATTTTGTCTGTTTTCCCTCCCTGATTATCAAGGACAGAATTCATTCCTACCTTCACAATCAAATAGCATTGTTCATTTCTATACTGCCGATAGAATGCTATTCTGCAGAGTGGTGTACAGTAGCTTGAATGGTAACCAGAGTCTTAATGTATTTAAGTGTATGCAAGCAAAGAGTAATTTAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614617 lncRNA downstream 28673 72571079 ~ 72571602 (-) True G542758
TU614552 lncRNA downstream 78642 72519787 ~ 72521633 (-) True G542694
TU614449 lncRNA downstream 238916 72361092 ~ 72361359 (-) True G542594
TU614414 lncRNA downstream 257225 72341911 ~ 72343050 (-) True LOC110526521
TU614415 lncRNA downstream 258470 72341038 ~ 72341805 (-) False LOC110526521
TU615110 lncRNA upstream 45093 72766911 ~ 72767200 (-) True G543196
TU615115 lncRNA upstream 54696 72776514 ~ 72776961 (-) True G543201
TU615137 lncRNA upstream 82912 72804730 ~ 72804952 (-) True G543220
TU615138 lncRNA upstream 83251 72805069 ~ 72805291 (-) True G543221
TU615140 lncRNA upstream 86571 72808389 ~ 72808864 (-) False G543222
LOC110526964 mRNA downstream 70899 72504884 ~ 72529376 (-) True LOC110526964
XM_021607560.2 mRNA downstream 231600 72341021 ~ 72368675 (-) False LOC110526521
XM_021607558.2 mRNA downstream 332543 72256687 ~ 72267732 (-) True LOC110526519
XM_021607557.2 mRNA downstream 348863 72244467 ~ 72251412 (-) True LOC110526518
XM_021607540.2 mRNA downstream 445839 72151010 ~ 72154436 (-) False LOC110526513
XM_021607582.2 mRNA upstream 101420 72823238 ~ 72826594 (-) False LOC110526534
XM_036980922.1 mRNA upstream 101420 72823238 ~ 72826687 (-) True LOC110526534
NM_001165063.1 mRNA upstream 108663 72830481 ~ 72831872 (-) False rpb10
XM_036979146.1 mRNA upstream 108991 72830809 ~ 72831878 (-) False rpb10
XR_002473976.2 mRNA upstream 111452 72833270 ~ 72837247 (-) True LOC110526535
TU613497 other downstream 986435 71612104 ~ 71613840 (-) False G541798
TU613501 other downstream 987583 71609531 ~ 71612692 (-) False G541798
TU613499 other downstream 990269 71609531 ~ 71610006 (-) False G541798
TU612280 other downstream 1934414 70650964 ~ 70665861 (-) True LOC110526488
TU611977 other downstream 2493100 70103798 ~ 70107175 (-) True G540376
TU615144 other upstream 87959 72809777 ~ 72810172 (-) True G543224
TU615248 other upstream 275710 72997528 ~ 73020000 (-) True G543313
TU615252 other upstream 284415 73006233 ~ 73006997 (-) True LOC110526540
TU615272 other upstream 306955 73028773 ~ 73029102 (-) True G543334
TU615804 other upstream 840541 73562359 ~ 73562863 (-) True G543823

Expression Profile