RNA id: TU614776



Basic Information


Item Value
RNA id TU614776
length 344
lncRNA type intronic
GC content 0.33
exon number 2
gene id G542898
representative True

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72793218 ~ 72793696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTTCATTAACTCTATCTAATGCCATCTAACTTCATTAACTCCATCTAACTCCATTAACTTTATCTAATGCCATCTAACTCCATCAACTGTATCTAATGCCATCTAACTCCATTAACTGTATCTAATGCCATCTAACTTCATTAACTGTATCTAATGCCATCTAACTTCATTAACTCTATCTAATGCCATCTAACTTCATTAACTCCATCTTACTTCATTAACTCTATCTAATGCCATCTAACTTCATTAACTCCATCTAACTCCATTAACTCTATCTAATGCCATCTAACTTCATTAACTCCATCTAACTCCATTAACTGTATCTAATGCCATCTAACTTCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU614770 lncRNA upstream 13004 72779035 ~ 72780214 (+) True G542894
TU614767 lncRNA upstream 25895 72766911 ~ 72767323 (+) True G542891
TU614724 lncRNA upstream 31327 72708250 ~ 72761891 (+) True LOC110526531
TU614735 lncRNA upstream 72171 72716302 ~ 72721047 (+) False G542860
TU614736 lncRNA upstream 72171 72718845 ~ 72721047 (+) True G542860
TU614780 lncRNA downstream 10112 72803808 ~ 72804185 (+) True G542901
TU614781 lncRNA downstream 11707 72805403 ~ 72805604 (+) True G542902
TU614784 lncRNA downstream 26228 72819924 ~ 72820971 (+) True G542905
TU614714 lncRNA downstream 29540 72823236 ~ 72826432 (+) True G542843
TU614785 lncRNA downstream 38808 72832504 ~ 72832731 (+) True G542906
XM_036980916.1 mRNA upstream 90975 72691788 ~ 72702243 (+) False LOC110526530
XM_036980913.1 mRNA upstream 90975 72692922 ~ 72702243 (+) False LOC110526530
XM_036980915.1 mRNA upstream 90975 72692925 ~ 72702243 (+) False LOC110526530
XM_036980914.1 mRNA upstream 90975 72692926 ~ 72702243 (+) True LOC110526530
XM_036980911.1 mRNA upstream 102561 72689343 ~ 72690657 (+) True LOC118964931
XM_021607580.2 mRNA downstream 32901 72826597 ~ 72830480 (+) False LOC110526532
XM_021607581.2 mRNA downstream 32948 72826644 ~ 72830480 (+) True LOC110526532
XM_036980920.1 mRNA downstream 38288 72831984 ~ 72884038 (+) False LOC110526536
XM_021607583.2 mRNA downstream 45889 72839585 ~ 72884038 (+) False LOC110526536
XM_036980919.1 mRNA downstream 45890 72839586 ~ 72884038 (+) False LOC110526536
TU614766 other upstream 26367 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 126346 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 640824 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 690744 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 988756 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 244925 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 579109 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1494082 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2444104 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2628165 75421861 ~ 75422752 (+) True G545601

Expression Profile