RNA id: TU614780


Basic Information

Item Value
RNA id TU614780
length 378
lncRNA type intronic
GC content 0.49
exon number 1
gene id G542901
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72803808 ~ 72804185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggtaagctgctctgacagctaatgcttaaagttagagagggagatatgtctccagcttcagtgatttttgcaattcgtttcagtcattggcagtagagaactggaaggaattgcggccaaaggaggtgttggctttggggatgaccagtgaaatatacctgctggagcgcgtgctatgtgtgggtgttgctatggtgaccagtgagctgagataaggcagggctttacctagcaaagacttatagatgacctggagccaatgggtttggagacaaatatgtagcgagggccagccaacgagagcatacaggtcgcagtggtgggtagtatatggggctttggtgacaaaacggatggcactgtgatagacttcatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614776 lncRNA upstream 10112 72793218 ~ 72793696 (+) True G542898
TU614770 lncRNA upstream 23594 72779035 ~ 72780214 (+) True G542894
TU614767 lncRNA upstream 36485 72766911 ~ 72767323 (+) True G542891
TU614724 lncRNA upstream 41917 72708250 ~ 72761891 (+) True LOC110526531
TU614781 lncRNA downstream 1218 72805403 ~ 72805604 (+) True G542902
TU614784 lncRNA downstream 15739 72819924 ~ 72820971 (+) True G542905
TU614714 lncRNA downstream 19051 72823236 ~ 72826432 (+) True G542843
TU614785 lncRNA downstream 28319 72832504 ~ 72832731 (+) True G542906
TU614795 lncRNA downstream 47463 72851648 ~ 72852100 (+) True G542916
XM_036980916.1 mRNA upstream 101565 72691788 ~ 72702243 (+) False LOC110526530
XM_036980913.1 mRNA upstream 101565 72692922 ~ 72702243 (+) False LOC110526530
XM_036980915.1 mRNA upstream 101565 72692925 ~ 72702243 (+) False LOC110526530
XM_036980914.1 mRNA upstream 101565 72692926 ~ 72702243 (+) True LOC110526530
XM_036980911.1 mRNA upstream 113151 72689343 ~ 72690657 (+) True LOC118964931
XM_021607580.2 mRNA downstream 22412 72826597 ~ 72830480 (+) False LOC110526532
XM_021607581.2 mRNA downstream 22459 72826644 ~ 72830480 (+) True LOC110526532
XM_036980920.1 mRNA downstream 27799 72831984 ~ 72884038 (+) False LOC110526536
XM_021607583.2 mRNA downstream 35400 72839585 ~ 72884038 (+) False LOC110526536
XM_036980919.1 mRNA downstream 35401 72839586 ~ 72884038 (+) False LOC110526536
TU614766 other upstream 36957 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 136936 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 651414 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 701334 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 999346 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 234436 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 568620 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1483593 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2433615 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2617676 75421861 ~ 75422752 (+) True G545601

Expression Profile