RNA id: TU614781


Basic Information

Item Value
RNA id TU614781
length 202
lncRNA type intronic
GC content 0.42
exon number 1
gene id G542902
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72805403 ~ 72805604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cataaataatcaataattatTTCAACCGGACCAAAGCTTCGTCAATAGAAAAAGAGAAACAAGAAAGGCGTGTTCCCAATCAGGCGCATGGCTGAtgtctggaaatttccactggccactgattgaaagtgctgcatctccctcatttttcagagtaaaagcctgaaacaatgcctaaagactggccacatgtagaagAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614780 lncRNA upstream 1218 72803808 ~ 72804185 (+) True G542901
TU614776 lncRNA upstream 11707 72793218 ~ 72793696 (+) True G542898
TU614770 lncRNA upstream 25189 72779035 ~ 72780214 (+) True G542894
TU614767 lncRNA upstream 38080 72766911 ~ 72767323 (+) True G542891
TU614735 lncRNA upstream 84356 72716302 ~ 72721047 (+) False G542860
TU614784 lncRNA downstream 14320 72819924 ~ 72820971 (+) True G542905
TU614714 lncRNA downstream 17632 72823236 ~ 72826432 (+) True G542843
TU614785 lncRNA downstream 26900 72832504 ~ 72832731 (+) True G542906
TU614795 lncRNA downstream 46044 72851648 ~ 72852100 (+) True G542916
TU614876 lncRNA downstream 181652 72987256 ~ 72987462 (+) True G542994
XM_036980916.1 mRNA upstream 103160 72691788 ~ 72702243 (+) False LOC110526530
XM_036980913.1 mRNA upstream 103160 72692922 ~ 72702243 (+) False LOC110526530
XM_036980915.1 mRNA upstream 103160 72692925 ~ 72702243 (+) False LOC110526530
XM_036980914.1 mRNA upstream 103160 72692926 ~ 72702243 (+) True LOC110526530
XM_036980911.1 mRNA upstream 114746 72689343 ~ 72690657 (+) True LOC118964931
XM_021607580.2 mRNA downstream 20993 72826597 ~ 72830480 (+) False LOC110526532
XM_021607581.2 mRNA downstream 21040 72826644 ~ 72830480 (+) True LOC110526532
XM_036980920.1 mRNA downstream 26380 72831984 ~ 72884038 (+) False LOC110526536
XM_021607583.2 mRNA downstream 33981 72839585 ~ 72884038 (+) False LOC110526536
XM_036980919.1 mRNA downstream 33982 72839586 ~ 72884038 (+) False LOC110526536
TU614766 other upstream 38552 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 138531 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 653009 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 702929 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 1000941 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 233017 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 567201 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1482174 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2432196 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2616257 75421861 ~ 75422752 (+) True G545601

Expression Profile