RNA id: TCONS_00032852


Basic Information

Item Value
RNA id TCONS_00032852
length 937
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_016750
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42776224 ~ 42871286 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCATCATTGTCTGAGGATCAAGATACTGGGGGATTGTTATTATTGTGTTTCTGGCCTTCCTGAGCCTCGGCCAGATCATGCTCACTGCTGCGTTGAGATGGGCCTCAGCATGATCAAAACCATCAGATACGTGCGCTCTCGTACAAAACATGACATAGACATGCGCATTGGCATCCACTCTGGCTCGGTTCTGTGCGGAGTTCTTGGTTTGCGGAAATGGCAGTTTGACGTGTGGTCTTGGGATGTGGACATAGCCAACAAACTGGAGTCGGGGGGAATACCTGGGAGGATCCACATCTCTAAAGCGGCTCTCGACTGTCTGAACGGAGATTACGAGGTGGAGGAGGGTCATGGTAAGGACCGTAATGACTTCCTGCGCAGGCATAACATCGAGACCTTCCTGATCAAGCAGCCGGAGGAGAGCTTGCTTACACTACCCGAGGACATCATGAGAGACTCCACCAACCAATCAGATCACAGGACCTCCAACACTTCCTTCACAGAGGGAACGTGGAGCCCTGAACTTCCCTTCCATAACATAGTGGGCAAGCAGAATtattcccAGATGAGAGATGAGGTGTTTAAGTCAAATCTAGTGTGTGCCTTCATTGTTCTCTTCTTCATCACTGGAATACAGAGCTTACTTCCCTCTGCAAGGATGGTAACGATGCTGATCCAGTTCTCTGTCCTCATCCTGCTGCACTGCTGCCTTGTTGTTGTGACCACTGCCGAGGATTACAAGTGTTTGCCGCTGGTTTTGCGTAAAGCGTGCTGCTGGGTGAATGAAACCTACGCCGCGCGGAACGTCGTCATCTTCCTGTCCATCCTTATTAACTTTCTGGCTGCCATGATCAACATACTTTGGTGTGATTTTGATAAATCGGGCTCATTCAGGAACCAGACGTTTAATGCATCCGCCTCAATCCCAGATATCT

Function

GO:

id name namespace
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0016199 axon midline choice point recognition biological_process
GO:0006171 cAMP biosynthetic process biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004016 adenylate cyclase activity molecular_function
GO:0016829 lyase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016849 phosphorus-oxygen lyase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko04015 Rap1 signaling pathway
ko04371 Apelin signaling pathway
ko04020 Calcium signaling pathway
ko04072 Phospholipase D signaling pathway
ko04024 cAMP signaling pathway
ko04022 cGMP-PKG signaling pathway
ko04114 Oocyte meiosis
ko04540 Gap junction
ko04611 Platelet activation
ko04062 Chemokine signaling pathway
ko04911 Insulin secretion
ko04923 Regulation of lipolysis in adipocytes
ko04912 GnRH signaling pathway
ko04913 Ovarian steroidogenesis
ko04915 Estrogen signaling pathway
ko04914 Progesterone-mediated oocyte maturation
ko04921 Oxytocin signaling pathway
ko04926 Relaxin signaling pathway
ko04935 Growth hormone synthesis, secretion and action
ko04918 Thyroid hormone synthesis
ko04928 Parathyroid hormone synthesis, secretion and action
ko04916 Melanogenesis
ko04925 Aldosterone synthesis and secretion
ko04927 Cortisol synthesis and secretion
ko04261 Adrenergic signaling in cardiomyocytes
ko04270 Vascular smooth muscle contraction
ko04970 Salivary secretion
ko04971 Gastric acid secretion
ko04972 Pancreatic secretion
ko04976 Bile secretion
ko04724 Glutamatergic synapse
ko04727 GABAergic synapse
ko04725 Cholinergic synapse
ko04720 Long-term potentiation
ko04723 Retrograde endocannabinoid signaling
ko04742 Taste transduction
ko04750 Inflammatory mediator regulation of TRP channels
ko04211 Longevity regulating pathway
ko04213 Longevity regulating pathway - multiple species
ko04713 Circadian entrainment
ko04714 Thermogenesis
ko05200 Pathways in cancer
ko05207 Chemical carcinogenesis - receptor activation
ko05166 Human T-cell leukemia virus 1 infection
ko05163 Human cytomegalovirus infection
ko05032 Morphine addiction
ko05414 Dilated cardiomyopathy
ko04934 Cushing syndrome
ko01522 Endocrine resistance

ZFIN:

id description
ZDB-GENE-070912-197 Predicted to enable adenylate cyclase activity. Acts upstream of or within axon midline choice point recognition and retinal ganglion cell axon guidance. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in retinal ganglion cell. Orthologous to human ADCY8 (adenylate cyclase 8).

Ensembl:

ensembl_id ENSDART00000137913

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033922 lncRNA downstream 43249 42756891 ~ 42771978 (-) False XLOC_016749
TCONS_00033921 lncRNA downstream 43356 42719037 ~ 42771871 (-) False XLOC_016749
TCONS_00033396 lncRNA downstream 50752 42759553 ~ 42764475 (-) True XLOC_016749
TCONS_00033920 lncRNA downstream 97501 42713799 ~ 42717726 (-) True XLOC_016748
TCONS_00033919 lncRNA downstream 104798 42708669 ~ 42710429 (-) True XLOC_016747
TCONS_00033397 lncRNA upstream 92084 42935881 ~ 42936238 (-) True XLOC_016751
TCONS_00033398 lncRNA upstream 119065 42962862 ~ 42978612 (-) True XLOC_016754
TCONS_00033400 lncRNA upstream 137407 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033399 lncRNA upstream 137407 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033923 lncRNA upstream 139092 42982889 ~ 42986970 (-) True XLOC_016755
TCONS_00032847 mRNA downstream 109943 42654740 ~ 42705284 (-) False XLOC_016744
TCONS_00032844 mRNA downstream 110364 42605252 ~ 42704863 (-) False XLOC_016744
TCONS_00032845 mRNA downstream 187199 42605392 ~ 42628028 (-) False XLOC_016744
TCONS_00032843 mRNA downstream 256678 42496523 ~ 42558549 (-) True XLOC_016742
TCONS_00032842 mRNA downstream 262561 42496498 ~ 42552666 (-) False XLOC_016742
TCONS_00032853 mRNA upstream 98755 42942552 ~ 42960353 (-) False XLOC_016752
TCONS_00032854 mRNA upstream 109469 42953266 ~ 42958113 (-) False XLOC_016752
TCONS_00032855 mRNA upstream 109572 42953369 ~ 42958619 (-) True XLOC_016752
TCONS_00032857 mRNA upstream 157715 43001512 ~ 43010396 (-) True XLOC_016756
TCONS_00032858 mRNA upstream 170582 43014379 ~ 43083749 (-) False XLOC_016757
TCONS_00032848 other downstream 110294 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 399439 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 440118 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 868331 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032808 other downstream 1195115 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032856 other upstream 118431 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032894 other upstream 1349002 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1679059 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 1914252 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 1919285 44763082 ~ 44763375 (-) True XLOC_016791

Expression Profile

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