RNA id: TU615146


Basic Information

Item Value
RNA id TU615146
length 4723
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G543225
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72810903 ~ 72815653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttGATATATAAGATTGTGCACCCCACAGATGTGTGACtaaagagagaacagaagagagcaaGAGATGGGACAAAGGGATGTCAAGGACATACAGATATCAACATCCCCAATGAAAACTTTTTACATACACAATTTTAATTAATCCTTTATACAATGTCACAAAATCCTGACCTATTTTGGACAATCCTCCTCGTATCTCCACCAATATCTGTGTAGAGAGCACTAATCAGACATTTAGGGTGATTTCAATCTGAGTGACCACTGATCAGTTTTCATATTTATTTAGATCTGTGTTTTGAATTGCTACTGGGGTTTTCTAGGGCCAAGGAAGGACTCTACTAAGATTCCAAGCTCAATGCCTCAGGCAAATGGACCATACCTGGCTTCTGGACCTATTTTCAGTTCAGGGAAATCAAGTAAAACAAATAATTAATTTTCACCTGTATCATGCCATTTTATCTGTGTTTCCTATTCTAGCTGATCTTTTCAATTTAATGCTGCGTCTGCATACATAATGATGTATCGTTTGCTTGTGTGCTCAGTATGAGGCAGGGCGGTGACTCTGTTCCCAGTTATTTTAGGAGCAGGTAGGTGCTCTGCTATGTTCTGCTCTGCCTGGAGATTGCAGTGATGCAAATGAGGTGATGATCATTGTCTGTCTCACCTTTTCTCTGTGACACTTGGGGAGTGAGAGCatatggaggagagggggaggggtgttgTTTAAGAGCACCTTGTGCCAAAAAGCATGTGTGTCACAGTGGGGTTTTGAAGTACGTCAGCACTGACGTATGGAGACCTCGTCTGTCTTAGTCTCAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACCGCGTATTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAAACCTAGAGGGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGTGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGAGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGGGGAGGGACAGCGTGTTGGGCCAGACCTAGAGGGGAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACGTGTTGGGCCAGACCTAGAGGGGAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACGTAGAGGGAAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAGTGTGTTGGGCCAGACCTAGAGGGGAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAACGTTTTGGGCCAGACCTAGAGGGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAACGTTTTGGGCCAGACCTAGAGGGGAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAACATTTTGGGCCAGACCTAGAGGGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGTGCCAGACCTAGAGGGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAACGTTTTGGGCCAGACCTAGAGCGGAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCATGTTGTGGTTCTGTAAGCCACCTATTAAATGGTAAACCAGAACACAAGGCCCCTGATGCACACAGGCCTGAGTGAACGGTCCCTCTGCCCAACAGAAGAGGGCTAGAATAGAATATGCTGTATGTGGTATTGTCAGATGTAAtgagctcccctctctctcttctctttgtttctctcttcaCTCAGATTCTCGAATGTCTATGGCCCCCTCCCCAACCAACCCATAAAACCCCAACAAATAGAAAGTAGACACATGCCCTTTGTCACGTTCCAACATCCCAGTAATCATTAGCGTCTCCTCCTTAGCGATCAGCGACAACATGAATAATTAACTGAACATCTAAATTACTTTATACAGAATAAAAACAGCCAAAAAACAGATTCCATATTAAGAAAATGAAAATGGCAAAAGTGAACACcaagcacacatacatacacggtaaacacaaacagtcagatgttgacacactcatacacacattgcaaacacacacacacacacacacacacattcagtaaACACAAATAAACAGTCAAATGTAAACAGAAAATAGGTTTAGTTGATATTATTACTCTTGTAGCTATCCTTCAGCCCACTGTGTGATGAGAGAGAAACTTAATCTTGGAACAGGTCACTCCAGGATGACATCAGGAGCAGCACAGAGCAGAGGGGGTCTGGCCAGTAATGGAACAGCCTGGTCCTGaagcaggacagaacaggacagaggggGTTTGGTCCGTAACAGCTGTGGTCCTGAAGACCCACTAACACCCAACTATCTAACATTaggagcaggacagaacagagggggTTTGGTCTGTAACAGCCGTGGTCCTGAAGACCCATTAACACCCAACTATCTAACATcaggagcaggacagagcagagggggTTTGGTCTGTAATGAAACAGCCCTGGTCCTGAAGACCCACTAAGACCCTAACTATCTAACATctggagcaggacagagcagagggggTTTGGCCAGTAATGGAACAGCCTTCCACTAAGACCCTAAACATTTATCTACTAACATTCTTATAACAATGTGTTCTGTGACATGCACACTAATGAATAAGATGTTGACTAAATGACTTACAGACCAACTGACGTTACAGACACACGTTCCAACAGACAGGCAGAATTACACAAAATGACTGAGAGAGACAAACAGGTAACGTTACCAACCTTGATGGGGACAAGATCAATTGGCTTAGTGCTCCATTAGAAACAAAACTGACTCGGTTGGGAGAGGGGCATTTATTTATGGTTATCTGCAGTGGATGATGCAATTGAGAGAAAGCAGCTCAGATGAAGACTGGTGGTTCATGTCAAGTTCCTCCTCTGCTTACCATTCCACACCAGGTAGCAGGCACCACCCTACAGactgtacccctctctctctgtcactgcttAGCTGCTGTGACCTCTCCAAGTCTTCAAACATATCCAGTAGAATACTGATGATTATTATTGTCATCATTATTATCAGTAACATTGTCGTTATTCATTTGATAGCAGTGCAAGCCCAATACTTTCACACACTTGCACTCGCATTCACACTCTAACTTTCgctgacacgcacgcacgcacgcacacacacacacacacgcacacacacacacacacacacacacagagaatacgaCAGAATAATAGCTGTCTTTTTGCTTCTATTTACTGTCTCTGGAAGAACATTTTGATTGGTCTCTTTAGGCTttttaaaaacaaaacacaacattGATGACTTTACTCTTTTTCTGTCATtaatcttttttttctctccagaaaATAGGAACGTCTTTTTACATTTCCCCCATGGACCAGTGTAAATGATCAGTCATTTTCTCCTTTTTTCATCTAGAAATTCATTTGGAGTTACAGCACATCACCCACAGCACGCACAGACAACAAGGGGGTCCAGCCAGGGAAGACTCACCACAgtggtgggagagaaagagatcagaGATGATGAACGGGGTGGAGTGACAGTGTCACGTCTAATTCCATTATCATCCAGACAGTCCATCCCTCTTCTATACCATTGGTTTGCAACTCTCTCTCTATCGATCCTTCCTGTTATATTCTCTGTGTGTTTGCAGAAGGGAATGGACCAAAGGGTCAACGTgggaagcaaaaaaaaaaaaatgaacagcCAACCAGATTGCTTCTGACGACAGAGAGAGCAGTGATTAGGGAGAGAAGTAGCCTCCCCTCACTGACACAGGAGAACGATGGAGAGACACAGGATTAATGGTGGAACTGGATTCCTTGTCGGTCAGTCTGTCACACAGTCACAGATTTAATGTTTCCTGAAAGACAGGCCCTTCACCAGCTCCTTACGCAGGATTCTTATATGGTCTATtttaacctgtttttgttggtggCTGAGGCTCACCCTAGGGCTGGCAGAGTGTGCTGCTCCAGAGTAAAACAGAGTAAAGGTGGACCAAGGAGAAAAAACTATGGTTGAGAGGAAGGTATGACTTAAAAGCAACAAGACTCAGAAAGGACCCGGCTAaacagagaggagtagaggaaggAGAAGCTCATTAGGGATCTGAGAGAGGACAGGCATGAGGAGAGGGTGGATGCGTAGGGTGGATGCGTTGGATGGCTATTTGTACCCATGTTCTGCAGCGAGTCAGCCTTGTGCATAACGATAGGGTGGGAGGGCAGGGCAGGGGGCTGGGATGGTCTGGGTGGATGTGACTGGACCTACAGTATCAGGCCTTGAGGGCATGCCACTGCTGCACGGCATTACGAGGTTTACCCATCATGTCCTTCCAGTGCTTCACCTCCGCTGGACCACTCTTCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU615143 lncRNA downstream 1266 72809049 ~ 72809637 (-) True G543223
TU615141 lncRNA downstream 1867 72808389 ~ 72809036 (-) False G543222
TU615142 lncRNA downstream 1867 72808620 ~ 72809036 (-) True G543222
TU615140 lncRNA downstream 2039 72808389 ~ 72808864 (-) False G543222
TU615139 lncRNA downstream 2039 72808620 ~ 72808864 (-) False G543222
TU615136 lncRNA upstream 4181 72819834 ~ 72821473 (-) True G543219
TU615131 lncRNA upstream 15168 72830821 ~ 72831873 (-) True rpb10
TU615183 lncRNA upstream 68764 72884417 ~ 72885653 (-) True G543251
TU615168 lncRNA upstream 71738 72887391 ~ 72887933 (-) True G543240
TU615166 lncRNA upstream 72862 72888515 ~ 72894947 (-) True G543238
LOC110526964 mRNA downstream 281527 72504884 ~ 72529376 (-) True LOC110526964
XM_021607560.2 mRNA downstream 442228 72341021 ~ 72368675 (-) False LOC110526521
XM_021607558.2 mRNA downstream 543171 72256687 ~ 72267732 (-) True LOC110526519
XM_021607557.2 mRNA downstream 559491 72244467 ~ 72251412 (-) True LOC110526518
XM_036980889.1 mRNA downstream 656467 72151010 ~ 72154436 (-) True LOC110526513
XM_021607582.2 mRNA upstream 7585 72823238 ~ 72826594 (-) False LOC110526534
XM_036980922.1 mRNA upstream 7585 72823238 ~ 72826687 (-) True LOC110526534
NM_001165063.1 mRNA upstream 14828 72830481 ~ 72831872 (-) False rpb10
XM_036979146.1 mRNA upstream 15156 72830809 ~ 72831878 (-) False rpb10
XR_002473976.2 mRNA upstream 17617 72833270 ~ 72837247 (-) True LOC110526535
TU615144 other downstream 731 72809777 ~ 72810172 (-) True G543224
TU614997 other downstream 89085 72600275 ~ 72721818 (-) False G543091
TU614993 other downstream 101883 72657410 ~ 72709020 (-) True G543091
TU615000 other downstream 144190 72659456 ~ 72666713 (-) True G543092
TU614994 other downstream 151999 72654398 ~ 72658904 (-) False G543091
TU615248 other upstream 181875 72997528 ~ 73020000 (-) True G543313
TU615252 other upstream 190580 73006233 ~ 73006997 (-) True LOC110526540
TU615272 other upstream 213120 73028773 ~ 73029102 (-) True G543334
TU615804 other upstream 746706 73562359 ~ 73562863 (-) True G543823
TU616724 other upstream 1453590 74269243 ~ 74274326 (-) True sinhcafl

Expression Profile