RNA id: TU614714


Basic Information

Item Value
RNA id TU614714
length 2015
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id G542843
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72823236 ~ 72826432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaacatttctgggatcttttatttcagctcatgaaaccaacactttacatgttgcgtttatatttttgttcagtatagttaactCACACATCCGTGTACTACAGTCATTATTTTCATTTTGTGTTGAAGGTCTTATGAATAAGGCCGGTGATGCATGTGCATGTAGCTGTAGGAATTATCCTTGTCAAGGAGGTACATTTCTCTGATAAATTGAGATCATTAGCATTCTCTGAGGGTGTTTTCACACTTGGTCCttttcagaaaaaaatgtgtcGCTTACTTTTTAGTGCAGTCTGATTGTCTGAAACCCCCCAAAGGAACTCAGACCACTCATAGAGCCCCCGAAGCAAACTTAGACCATTTCGAGAGGTAGTCTGAGTTCGGTTCGAATGAATTCCACGGTCCGGCTCCCTTTTTAAGGCTATGTGAACATAAAGCTCCCCAGATTCGCTTGTCATTATTCCCGCACCACACACTAGACTGCAGCAACACCGTTTTCCCTGCAATTGCCCCTCGCATTGGTGCCACAAATTAGATAAATTAGGGGGGGGGCATGTGCTATTTAAGGATATTGATTAGCGATTGTCAAGGATGCACAGAAATGCCATAATATGCGTTTAGTTTttagttcagattttttttttttgcaatatgTGACCTATATGCTAAGAGCTTCTTACGCTGTTTATTCGAATGTGGGGTTTGAATAGTGTGAGGAGACGATAACATAATTTGGTAAAAATCACAACATAGGGTTGAAAATCAATTCTacctcttaaaggggcagtggcCTACAATGGGTGTAAAATGTTCTACAGCATTATCTTATCGGCAGTAATTATTCTGCAATTTAGTATGTTACCaataatatttacatgttaatagTATCTTCTAATTATTGTCTCATTTTTAACAAAATGCAATCTATTAGCTTCCAAAATATAAGTAGGTATATGGTGTATCTAGCTGTCCGATAGCATATTCTGATGGAATGGCTTGTCCTGCACTTTGTAAAAACCCACAGTGCATTGAATGAATGTTGGAAAAAGATATTGGTTCCTTTCTAAACATAGTAATGTGAATGCAAAGAGGACTCAGACAACAAAATAGGTGAAGTGAACTGGCACAGGAGTTAAGTCCTCGTTCAAAGGTAAGGGCAGTGTGAATACAAAGAGAACAGATcttttgcttatttttttaccctcagagttcactttaaagaggactgagatcagTTATTTTAAAGAAGACTATAATGTGAAAACACCCTGAGAGGGATGTGTCAGCCAGGCTTCACTGGCTCCCCTTGTCCAGGTATTCCAGGTTGGGTGCATCCAGCCTTTGTTCCTGATCTTTGTTCTTTGTGAACTCCTTGAGTAGATCCATGATTTCACCTGCGTACACATCAGGTACAGGCTGGGCCTCTGTTGCCCAGTAGTAGATGTCCCAGTCGTTGCTAGGCTCGTTGATCAGTCTGTCATACTGTCTTAACTGGGGCTCGTTCATTGTATTAAGATATTGTTTGGCAAACAGGCTGAGCAATATGCAATTCTCCAGCATGCCCCTCTTTCGGCTTTGGAAGAGCAGGCGCCGTCTCTTGATGTCCATGGTCTCACCATCCTTCTCTGTCCAGGGGGGCAGGGGGATCTCAATTATGTCACCCCTAGAGTCATCAGGTGCCTCTCCTTTGTAACCCCGTGTAGTTACTAGTTCTACCACAGCTGGTCTCAATGACTCCTGGCATACCCCACTTACCAGTCTTTTAGCAACGAGAACAGACAGCATTGTGTCTTTCTTCCTTGTGACTGCTGAATCCTGATGTAACTGTTCTTGTTGACTCGAGAGTAACCAGTGTCCTAAAATTATACAAGTCCCTGCTAGCCAAAGACAGTCACATAATTACAAGGGGAGCACAGCAAGAAATGTCCGCTCTAGCTTAGGGAAATAATTGGCGCCATATTGGTAAGGGCAATTATTACTTATTCCAAATTATTCTTGAAATGCATGTTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614784 lncRNA upstream 2265 72819924 ~ 72820971 (+) True G542905
TU614781 lncRNA upstream 17632 72805403 ~ 72805604 (+) True G542902
TU614780 lncRNA upstream 19051 72803808 ~ 72804185 (+) True G542901
TU614776 lncRNA upstream 29540 72793218 ~ 72793696 (+) True G542898
TU614770 lncRNA upstream 43022 72779035 ~ 72780214 (+) True G542894
TU614785 lncRNA downstream 6072 72832504 ~ 72832731 (+) True G542906
TU614795 lncRNA downstream 25216 72851648 ~ 72852100 (+) True G542916
TU614876 lncRNA downstream 160824 72987256 ~ 72987462 (+) True G542994
TU614891 lncRNA downstream 201768 73028200 ~ 73028554 (+) True G543009
TU614894 lncRNA downstream 205095 73031527 ~ 73031864 (+) True G543012
XM_036980917.1 mRNA upstream 7516 72708157 ~ 72815720 (+) False LOC110526531
XM_021607580.2 mRNA downstream 165 72826597 ~ 72830480 (+) False LOC110526532
XM_021607581.2 mRNA downstream 212 72826644 ~ 72830480 (+) True LOC110526532
XM_036980920.1 mRNA downstream 5552 72831984 ~ 72884038 (+) False LOC110526536
XM_021607583.2 mRNA downstream 13153 72839585 ~ 72884038 (+) False LOC110526536
XM_036980919.1 mRNA downstream 13154 72839586 ~ 72884038 (+) False LOC110526536
TU614766 other upstream 56385 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 156364 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 670842 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 720762 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 1018774 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 212189 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 546373 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1461346 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2411368 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2595429 75421861 ~ 75422752 (+) True G545601

Expression Profile