RNA id: TU614785


Basic Information

Item Value
RNA id TU614785
length 228
lncRNA type intronic
GC content 0.44
exon number 1
gene id G542906
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72832504 ~ 72832731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAAATGTTGTAATTGAATGAGCTGCGCCTCATTCATAGCTCCATTTaaatttatactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaaggggggtgagtgtaatggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614714 lncRNA upstream 6072 72823236 ~ 72826432 (+) True G542843
TU614784 lncRNA upstream 11533 72819924 ~ 72820971 (+) True G542905
TU614781 lncRNA upstream 26900 72805403 ~ 72805604 (+) True G542902
TU614780 lncRNA upstream 28319 72803808 ~ 72804185 (+) True G542901
TU614776 lncRNA upstream 38808 72793218 ~ 72793696 (+) True G542898
TU614795 lncRNA downstream 18917 72851648 ~ 72852100 (+) True G542916
TU614876 lncRNA downstream 154525 72987256 ~ 72987462 (+) True G542994
TU614891 lncRNA downstream 195469 73028200 ~ 73028554 (+) True G543009
TU614894 lncRNA downstream 198796 73031527 ~ 73031864 (+) True G543012
TU614895 lncRNA downstream 199385 73032116 ~ 73032334 (+) True G543013
XM_021607580.2 mRNA upstream 2024 72826597 ~ 72830480 (+) False LOC110526532
XM_021607581.2 mRNA upstream 2024 72826644 ~ 72830480 (+) True LOC110526532
XM_036980917.1 mRNA upstream 16784 72708157 ~ 72815720 (+) False LOC110526531
XM_021607583.2 mRNA downstream 6854 72839585 ~ 72884038 (+) False LOC110526536
XM_036980919.1 mRNA downstream 6855 72839586 ~ 72884038 (+) False LOC110526536
XM_021607585.2 mRNA downstream 6857 72839588 ~ 72884038 (+) False LOC110526536
XM_021607586.2 mRNA downstream 6872 72839603 ~ 72877957 (+) True LOC110526536
XM_036980921.1 mRNA downstream 51746 72884477 ~ 72907006 (+) True LOC110526537
TU614766 other upstream 65653 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 165632 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 680110 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 730030 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 1028042 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 205890 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 540074 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1455047 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2405069 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2589130 75421861 ~ 75422752 (+) True G545601

Expression Profile