RNA id: TU614894


Basic Information

Item Value
RNA id TU614894
length 338
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G543012
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73031527 ~ 73031864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcgtctcaaataaaactgtgaaggacctcggcgttactctggaccctgatctctcttttgaagaacatatcaagaccatttcaaggacagcttttttccatctacgtaacattgcaaaaatcagaaactttctgtccaaaaatgatgcagaaaaatttatccatgcttttgtcacttctaggttagactactgcaatgctctactttccggctacccggataaagcactaaataaacttcagttagtgctaaatacggctgctagaatcctgactagaaccaaaaaatttgatcatattactccagtgctagcctccctacactggcttcctgtcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614891 lncRNA upstream 2973 73028200 ~ 73028554 (+) True G543009
TU614876 lncRNA upstream 44065 72987256 ~ 72987462 (+) True G542994
TU614795 lncRNA upstream 179427 72851648 ~ 72852100 (+) True G542916
TU614785 lncRNA upstream 198796 72832504 ~ 72832731 (+) True G542906
TU614714 lncRNA upstream 205095 72823236 ~ 72826432 (+) True G542843
TU614895 lncRNA downstream 252 73032116 ~ 73032334 (+) True G543013
TU614896 lncRNA downstream 647 73032511 ~ 73032760 (+) True G543014
TU614901 lncRNA downstream 3250 73035114 ~ 73035455 (+) True G543016
TU614902 lncRNA downstream 4579 73036443 ~ 73037024 (+) True G543017
TU614941 lncRNA downstream 51823 73083687 ~ 73085986 (+) True G543050
XM_021607593.2 mRNA upstream 11526 73016213 ~ 73020001 (+) True LOC110526541
XR_005052450.1 mRNA upstream 11827 73019572 ~ 73019700 (+) True LOC118965119
LOC118965096 mRNA upstream 12270 73019055 ~ 73019257 (+) True LOC118965096
XR_005052444.1 mRNA upstream 13988 73017408 ~ 73017539 (+) True LOC118965112
XM_021604998.2 mRNA upstream 18103 73011717 ~ 73013424 (+) True LOC110525049
XM_036980923.1 mRNA downstream 6089 73037953 ~ 73182742 (+) False LOC110526543
XM_036980924.1 mRNA downstream 6090 73037954 ~ 73182742 (+) False LOC110526543
XM_036980925.1 mRNA downstream 6090 73037954 ~ 73182742 (+) False LOC110526543
XM_036980928.1 mRNA downstream 6090 73037954 ~ 73182742 (+) False LOC110526543
XM_036980926.1 mRNA downstream 6091 73037955 ~ 73182742 (+) False LOC110526543
TU614766 other upstream 264676 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 364655 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 879133 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 929053 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 1227065 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 6757 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 340941 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1255914 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2205936 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2389997 75421861 ~ 75422752 (+) True G545601

Expression Profile