RNA id: TU614902


Basic Information

Item Value
RNA id TU614902
length 582
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G543017
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73036443 ~ 73037024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttggattgggagctttgctgcacagctattttcagctctctccagaaatgttcgattggattcaagtccggactctggctgggccactcacggacattcagagacttgtcctgaagccactcctgccttgtcttggctgtgtacttagggtcattgtcttgttgtaaggtgaacctttgccccagtctgaggtcctgagcactctggagaaggTTGCCATCAAgcacctctctgtactttgctctgttcatctcgatcctgactagtctcccagtccctgctgctgaaaaacattcccacagcatgatggtgccaccaccatgcttcactgtagcaatggtgccaggtttcctccagacgtgaagcttgacattcaggcaaaatagttcaattttggtttcatcagaccagagaatcttgtttctcatggtctgagtgtctttagataccttttggcaaactccaagtgggctgtcatgtgcattttactgagaagtggcttccgtctggccactctaccataaaggcctgattggtgaggtgctgcagagatggttgtccttctgaaaggttctcccccC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614901 lncRNA upstream 988 73035114 ~ 73035455 (+) True G543016
TU614896 lncRNA upstream 3683 73032511 ~ 73032760 (+) True G543014
TU614895 lncRNA upstream 4109 73032116 ~ 73032334 (+) True G543013
TU614894 lncRNA upstream 4579 73031527 ~ 73031864 (+) True G543012
TU614891 lncRNA upstream 7889 73028200 ~ 73028554 (+) True G543009
TU614941 lncRNA downstream 46663 73083687 ~ 73085986 (+) True G543050
TU615370 lncRNA downstream 146622 73183646 ~ 73183904 (+) True G543414
TU615389 lncRNA downstream 159412 73196436 ~ 73200010 (+) True G543426
TU615400 lncRNA downstream 183007 73220031 ~ 73253625 (+) True G543435
TU615378 lncRNA downstream 353058 73390082 ~ 73392251 (+) False LOC100136290
XM_021607593.2 mRNA upstream 16442 73016213 ~ 73020001 (+) True LOC110526541
XR_005052450.1 mRNA upstream 16743 73019572 ~ 73019700 (+) True LOC118965119
LOC118965096 mRNA upstream 17186 73019055 ~ 73019257 (+) True LOC118965096
XR_005052444.1 mRNA upstream 18904 73017408 ~ 73017539 (+) True LOC118965112
XM_021604998.2 mRNA upstream 23019 73011717 ~ 73013424 (+) True LOC110525049
XM_036980923.1 mRNA downstream 929 73037953 ~ 73182742 (+) False LOC110526543
XM_036980924.1 mRNA downstream 930 73037954 ~ 73182742 (+) False LOC110526543
XM_036980925.1 mRNA downstream 930 73037954 ~ 73182742 (+) False LOC110526543
XM_036980928.1 mRNA downstream 930 73037954 ~ 73182742 (+) False LOC110526543
XM_036980926.1 mRNA downstream 931 73037955 ~ 73182742 (+) False LOC110526543
TU614766 other upstream 269592 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 369571 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 884049 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 933969 72101380 ~ 72102474 (+) True G542053
TU613619 other upstream 1231981 71800040 ~ 71804462 (+) True G541903
TU614905 other downstream 1597 73038621 ~ 73145347 (+) True LOC110526543
TU615384 other downstream 335781 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1250754 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2200776 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2384837 75421861 ~ 75422752 (+) True G545601

Expression Profile