RNA id: TU615370


Basic Information

Item Value
RNA id TU615370
length 259
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G543414
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73183646 ~ 73183904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaggccaaatctacactggagtttcttaccaagaagacagtgaatgttcctgagtggctgagttacagttttgactgaaatctacttgaaaatctatggcaagacctgaaaatgtttTTCTAGCAATAATCAatcaccaatttgacagagcttgaagaatttgaaaagaataatgggtaaatgttgcacaatctaTGTGTGGAAAgaccttagagacttacccagaaagagtgcttctacaaagtattgactcagggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU614941 lncRNA upstream 97660 73083687 ~ 73085986 (+) True G543050
TU614902 lncRNA upstream 146622 73036443 ~ 73037024 (+) True G543017
TU614901 lncRNA upstream 148191 73035114 ~ 73035455 (+) True G543016
TU614896 lncRNA upstream 150886 73032511 ~ 73032760 (+) True G543014
TU614895 lncRNA upstream 151312 73032116 ~ 73032334 (+) True G543013
TU615389 lncRNA downstream 12532 73196436 ~ 73200010 (+) True G543426
TU615400 lncRNA downstream 36127 73220031 ~ 73253625 (+) True G543435
TU615378 lncRNA downstream 206178 73390082 ~ 73392251 (+) False LOC100136290
TU615380 lncRNA downstream 206178 73390082 ~ 73392251 (+) True LOC100136290
TU615631 lncRNA downstream 228809 73412713 ~ 73412931 (+) True G543650
XM_036980923.1 mRNA upstream 904 73037953 ~ 73182742 (+) False LOC110526543
XM_036980924.1 mRNA upstream 904 73037954 ~ 73182742 (+) False LOC110526543
XM_036980925.1 mRNA upstream 904 73037954 ~ 73182742 (+) False LOC110526543
XM_036980928.1 mRNA upstream 904 73037954 ~ 73182742 (+) False LOC110526543
XM_036980926.1 mRNA upstream 904 73037955 ~ 73182742 (+) False LOC110526543
XM_036979115.1 mRNA downstream 7075 73190979 ~ 73392249 (+) False LOC100136290
XM_036979116.1 mRNA downstream 7075 73190979 ~ 73392249 (+) False LOC100136290
XM_036979119.1 mRNA downstream 7075 73190979 ~ 73392249 (+) False LOC100136290
XM_036979122.1 mRNA downstream 7075 73190979 ~ 73392249 (+) False LOC100136290
XM_036979123.1 mRNA downstream 7075 73190979 ~ 73392249 (+) False LOC100136290
TU614905 other upstream 38299 73038621 ~ 73145347 (+) True LOC110526543
TU614766 other upstream 416795 72765681 ~ 72766851 (+) True G542890
TU614654 other upstream 516774 72665460 ~ 72666872 (+) True saa
TU613870 other upstream 1031252 72151020 ~ 72152394 (+) True G542100
TU613820 other upstream 1081172 72101380 ~ 72102474 (+) True G542053
TU615384 other downstream 188901 73372805 ~ 73387687 (+) False LOC100136290
TU616612 other downstream 1103874 74287778 ~ 74288138 (+) True G544565
TU617662 other downstream 2053896 75237800 ~ 75238164 (+) True G545485
TU617795 other downstream 2237957 75421861 ~ 75422752 (+) True G545601
TU618729 other downstream 2744324 75928228 ~ 75970674 (+) True G546464

Expression Profile