RNA id: TCONS_00032855


Basic Information

Item Value
RNA id TCONS_00032855
length 630
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_016752
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 42942552 ~ 42960353 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTAAATGTTTTATACAACTGATGTATAAAACCCCATTTCCCACTGACCGTGACCGTTAAAATACGTGTATATTTATGTCGTACAGGTTGTCTGGGTGTGCGGTTGACCTGGCTGTACGCGGTGTTTGAAGACCTGCGGTCAGTGCTAGAGTTTGCGGTCAGTCTGCGGTGTGAGACTGGACTTTGTCCTGCAGACATCCAGGATCACGGGCATTACTGCAGTAACGCAAACACGCGGGACCTCCAGCAGATACAGCCCGTAGACGCGCTCGACGGGTGTTGTTTTACTCACTTGAGATGTTCACAAGAGCTAAAGGAGAGAAACTGCAGTCGCAGGGCACCATCAAACAACAACTACACCTGCAGCTACAACTCCAGCTGCGATATGTTGGATTTCTGTGATGAAGGATTCTGTCGGTGTGATCGAATGGTTATAGACTGCATCAGCTTCAACCGTCCAATCACAAAACAGGACAGAGATAACCAGCTTATCACATCACAGACAGTTTCTCCCTTTGTGACGGATCTACTTGAAAATGACACCTACATTAGTGATGTGGTCAATGTAACAGAAAGTGTGGATCTTCCCCTGTCAGACATCGACATGGAGACCATGTTCTACGAAGTAAAT

Function

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0048840 otolith development biological_process
GO:0050482 arachidonic acid secretion biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004623 phospholipase A2 activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-300 Predicted to enable calcium ion binding activity and phospholipase A2 activity. Acts upstream of or within otolith development. Predicted to be located in extracellular region. Is expressed in midbrain hindbrain boundary neural rod; nervous system; otic vesicle; pharyngeal arch 3-7 skeleton; and spinal cord neural rod. Orthologous to human OC90 (otoconin 90).

Ensembl:

ensembl_id ENSDART00000144317

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033397 lncRNA downstream 17131 42935881 ~ 42936238 (-) True XLOC_016751
TCONS_00033922 lncRNA downstream 181391 42756891 ~ 42771978 (-) False XLOC_016749
TCONS_00033921 lncRNA downstream 181498 42719037 ~ 42771871 (-) False XLOC_016749
TCONS_00033396 lncRNA downstream 188894 42759553 ~ 42764475 (-) True XLOC_016749
TCONS_00033920 lncRNA downstream 235643 42713799 ~ 42717726 (-) True XLOC_016748
TCONS_00033398 lncRNA upstream 4243 42962862 ~ 42978612 (-) True XLOC_016754
TCONS_00033400 lncRNA upstream 22585 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033399 lncRNA upstream 22585 42981204 ~ 42983010 (-) False XLOC_016755
TCONS_00033923 lncRNA upstream 24270 42982889 ~ 42986970 (-) True XLOC_016755
TCONS_00033924 lncRNA upstream 419483 43378102 ~ 43379093 (-) True XLOC_016763
TCONS_00032850 mRNA downstream 82083 42776224 ~ 42871286 (-) False XLOC_016750
TCONS_00032849 mRNA downstream 88897 42776224 ~ 42864472 (-) False XLOC_016750
TCONS_00032852 mRNA downstream 109572 42815227 ~ 42843797 (-) True XLOC_016750
TCONS_00032851 mRNA downstream 126033 42814942 ~ 42827336 (-) False XLOC_016750
TCONS_00032847 mRNA downstream 248085 42654740 ~ 42705284 (-) False XLOC_016744
TCONS_00032857 mRNA upstream 42893 43001512 ~ 43010396 (-) True XLOC_016756
TCONS_00032858 mRNA upstream 55760 43014379 ~ 43083749 (-) False XLOC_016757
TCONS_00032859 mRNA upstream 58676 43017295 ~ 43083755 (-) True XLOC_016757
TCONS_00032861 mRNA upstream 139618 43098237 ~ 43123949 (-) False XLOC_016758
TCONS_00032860 mRNA upstream 139618 43098237 ~ 43123949 (-) False XLOC_016758
TCONS_00032848 other downstream 248436 42672850 ~ 42704933 (-) True XLOC_016744
TCONS_00032837 other downstream 537581 42404061 ~ 42415788 (-) True XLOC_016740
TCONS_00032833 other downstream 578260 42372009 ~ 42375109 (-) True XLOC_016738
TCONS_00032811 other downstream 1006473 41945975 ~ 41946896 (-) True XLOC_016725
TCONS_00032808 other downstream 1333257 41617207 ~ 41620112 (-) True XLOC_016721
TCONS_00032856 other upstream 3609 42962228 ~ 42962344 (-) True XLOC_016753
TCONS_00032894 other upstream 1234180 44192799 ~ 44199697 (-) False XLOC_016779
TCONS_00032911 other upstream 1564237 44522856 ~ 44524381 (-) True XLOC_016786
TCONS_00032916 other upstream 1799430 44758049 ~ 44760347 (-) True XLOC_016790
TCONS_00032917 other upstream 1804463 44763082 ~ 44763375 (-) True XLOC_016791

Expression Profile

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